Maintenance Release (#16)

Author: mllg

DESCRIPTION

@@ -26,7 +26,5 @@ Suggests:
     randomForest,
     rpart,
     testthat
-LazyData: yes
-ByteCompile: yes
-Version: 1.4.2
-RoxygenNote: 7.1.0
+Version: 1.4.3
+RoxygenNote: 7.1.2

NEWS

@@ -1,3 +1,6 @@
+BatchExperiments_1.4.3
+- Maintenance release. Removed calls to deprecated `default.stringAsFactors()`.
+
 BatchExperiments_1.4.2
 - Added support for read-only mode of registries. See ?loadRegistry for more
   information.

R/reduceResultsExperiments.R

@@ -28,7 +28,7 @@
 #'   Additional arguments to \code{fun}.
 #' @param strings.as.factors [\code{logical(1)}]
 #'   Should all character columns in result be converted to factors?
-#'   Default is \code{default.stringsAsFactors()} for R < 4.1.0 and \code{FALSE} otherwise.
+#'   Default is \code{FALSE}.
 #' @param block.size [\code{integer(1)}]
 #'   Results will be fetched in blocks of this size.
 #'   Default is max(100, 5 percent of ids).
@@ -45,7 +45,7 @@
 #' @aliases ReducedResultsExperiments
 #' @export
 reduceResultsExperiments = function(reg, ids, part = NA_character_, fun, ...,
-  strings.as.factors = NULL, block.size, impute.val,
+  strings.as.factors = FALSE, block.size, impute.val,
   apply.on.missing = FALSE, progressbar = TRUE) {
 
   checkExperimentRegistry(reg, strict = TRUE, writeable = FALSE)
@@ -73,12 +73,6 @@ reduceResultsExperiments = function(reg, ids, part = NA_character_, fun, ...,
   else
     assertFunction(fun, c("job", "res"))
 
-  if (is.null(strings.as.factors)) {
-    if(getRversion() < "4.1.0")
-      strings.as.factors = default.stringsAsFactors()
-    else
-      strings.as.factors = FALSE
-  }
   assertFlag(strings.as.factors)
   if (missing(block.size)) {
     block.size = max(100L, as.integer(0.05 * length(ids)))

R/reduceResultsExperimentsParallel.R

@@ -18,7 +18,7 @@
 #' @return [\code{data.frame}]. Aggregated results, containing problem and algorithm paramaters and collected values.
 #' @export
 reduceResultsExperimentsParallel = function(reg, ids, part = NA_character_, fun, ...,
-  timeout = 604800L, njobs = 20L, strings.as.factors = default.stringsAsFactors(), impute.val,
+  timeout = 604800L, njobs = 20L, strings.as.factors = FALSE, impute.val,
   apply.on.missing = FALSE, progressbar = TRUE) {
   checkExperimentRegistry(reg, strict = TRUE, writeable = FALSE)
   syncRegistry(reg)

README.md

@@ -1,6 +1,6 @@
 # BatchExperiments
 
-[![CRAN_Status_Badge](http://www.r-pkg.org/badges/version/BatchExperiments)](http://cran.r-project.org/web/packages/BatchExperiments)
+[![CRAN_Status_Badge](https://www.r-pkg.org/badges/version/BatchExperiments)](http://cran.r-project.org/web/packages/BatchExperiments)
 [![Build Status](https://travis-ci.org/tudo-r/BatchExperiments.png)](https://travis-ci.org/tudo-r/BatchExperiments)
 [![Build status](https://ci.appveyor.com/api/projects/status/f9052xe5y3njcudd/branch/master?svg=true)](https://ci.appveyor.com/project/mllg/batchexperiments/branch/master)
 [![Coverage Status](https://coveralls.io/repos/tudo-r/BatchExperiments/badge.svg)](https://coveralls.io/r/tudo-r/BatchExperiments)
@@ -14,7 +14,7 @@
 To cite BatchJobs or BatchExperiments in publications use:
 
   Bernd Bischl, Michel Lang, Olaf Mersmann, Joerg Rahnenfuehrer, Claus Weihs (2015). BatchJobs and BatchExperiments: Abstraction Mechanisms for Using R in Batch Environments. Journal
-  of Statistical Software, 64(11), 1-25. URL http://www.jstatsoft.org/v64/i11/.
+  of Statistical Software, 64(11), 1-25. URL https://www.jstatsoft.org/v64/i11/.
 
 A BibTeX entry for LaTeX users is
 
@@ -26,7 +26,7 @@ A BibTeX entry for LaTeX users is
     volume = {64},
     number = {11},
     pages = {1--25},
-    url = {http://www.jstatsoft.org/v64/i11/},
+    url = {https://www.jstatsoft.org/v64/i11/},
   }
   ```
 
@@ -47,16 +47,16 @@ To install the latest stable release from CRAN:
 ```splus
 install.packages("BatchExperiments")
 ```
-To install the development version use [devtools](http://cran.r-project.org/web/packages/devtools):
+To install the development version use [devtools](https://cran.r-project.org/web/packages/devtools):
 ```splus
 library(devtools);
 install_github("tudo-r/BatchJobs")
 install_github("tudo-r/BatchExperiments")
 ```
 Please see the documentation of [BatchJobs](https://github.com/tudo-r/BatchJobs) to set up your system for parallel execution.
-Currently the best introduction to the package is our [technical report](http://sfb876.tu-dortmund.de/PublicPublicationFiles/bischl_etal_2012a.pdf).
-For more detailed information on the functions please use the [R documentation](http://tudo-r.github.io/BatchExperiments/).
+Currently the best introduction to the package is our [technical report](https://sfb876.tu-dortmund.de/PublicPublicationFiles/bischl_etal_2012a.pdf).
+For more detailed information on the functions please use the [R documentation](https://tudo-r.github.io/BatchExperiments/).
 You can also peek into some examples provided in the [wiki](../../wiki).
 
-We also have a [mailing list](http://groups.google.com/group/batchjobs).
+We also have a [mailing list](https://groups.google.com/group/batchjobs).
 

inst/CITATION

@@ -1,23 +1,23 @@
-citHeader("To cite BatchJobs or BatchExperiments in publications use:")
-
-citEntry(entry = "Article",
-  title        = "{BatchJobs} and {BatchExperiments}: Abstraction Mechanisms for Using {R} in Batch Environments",
-  author       = personList(as.person("Bernd Bischl"),
-                   as.person("Michel Lang"),
-                   as.person("Olaf Mersmann"),
-                   as.person("J{\\\"o}rg Rahnenf{\\\"u}hrer"),
-                   as.person("Claus Weihs")),
-  journal      = "Journal of Statistical Software",
-  year         = "2015",
-  volume       = "64",
-  number       = "11",
-  pages        = "1--25",
-  url          = "http://www.jstatsoft.org/v64/i11/",
-
-  textVersion  =
-  paste("Bernd Bischl, Michel Lang, Olaf Mersmann, Joerg Rahnenfuehrer, Claus Weihs (2015).",
-        "BatchJobs and BatchExperiments: Abstraction Mechanisms for Using R in Batch Environments.",
-        "Journal of Statistical Software, 64(11), 1-25.",
-        "URL http://www.jstatsoft.org/v64/i11/.")
-)
-
+citHeader("To cite BatchJobs or BatchExperiments in publications use:")
+
+citEntry(entry = "Article",
+  title        = "{BatchJobs} and {BatchExperiments}: Abstraction Mechanisms for Using {R} in Batch Environments",
+  author       = personList(as.person("Bernd Bischl"),
+                   as.person("Michel Lang"),
+                   as.person("Olaf Mersmann"),
+                   as.person("J{\\\"o}rg Rahnenf{\\\"u}hrer"),
+                   as.person("Claus Weihs")),
+  journal      = "Journal of Statistical Software",
+  year         = "2015",
+  volume       = "64",
+  number       = "11",
+  pages        = "1--25",
+  url          = "https://www.jstatsoft.org/v64/i11/",
+
+  textVersion  =
+  paste("Bernd Bischl, Michel Lang, Olaf Mersmann, Joerg Rahnenfuehrer, Claus Weihs (2015).",
+        "BatchJobs and BatchExperiments: Abstraction Mechanisms for Using R in Batch Environments.",
+        "Journal of Statistical Software, 64(11), 1-25.",
+        "URL https://www.jstatsoft.org/v64/i11/.")
+)
+