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Issues list

Overlapping 5.8S and 28S annotations in Eukaryotic rDNAs
#47 opened Nov 17, 2020 by BartvdVossenberg
4 👍 4
possible option for "prokaryotic" search (archaeal + procaryotic)?
#46 opened Nov 6, 2020 by jvollme
👍 2
Metagenome mode with ALL kingdoms enhancement
#4 opened Oct 20, 2014 by tseemann
@tseemann
3 👍 1
Add --slow/--accurate mode that uses RFAM/Infernal enhancement
#39 opened Oct 20, 2019 by tseemann
@tseemann
👍 1
Can not find required 'nhmmer'
#44 opened Sep 5, 2020 by Lcornet
1 👍 1
Replace SILVA databases with unencumbered-licence source enhancement
#13 opened Jul 28, 2015 by tseemann
@tseemann
8
enhancement: add option to slice input contigs enhancement
#17 opened Aug 29, 2016 by jbadomics Version 1.0
@tseemann
1
Check versions of bedtools is >= 2.27 enhancement
#34 opened Oct 31, 2018 by tseemann
@tseemann
1
archaea and bacteria 16S duplicate
#35 opened Feb 11, 2019 by chloelulu
@tseemann
1
Mycobacteria & 5S rRNA
#36 opened Apr 5, 2019 by ppgardne
Error: Cannot write foo.fa.fai index bug
#38 opened Oct 17, 2019 by tseemann
@tseemann
What does column 8 stand for?
#43 opened Aug 19, 2020 by roey-angel
Could the barrnap be used to predict the rrna of *.fna.gz file?
#45 opened Oct 7, 2020 by YulinzhangSia
1
Adding fungal HMM
#48 opened Dec 14, 2020 by danwiththeplan
4
Cannot specify a file on cmdline?
#52 opened Jan 7, 2021 by wwood
GFF output and Fasta-headers give different start-coordinates of rRNA-genes
#53 opened Jan 13, 2021 by jvollme
nhmmer failed to run - Error: Invalid alphabet type in target for nhmmer. Expect DNA or RNA
#54 opened Jan 16, 2021 by minjinhan
8
[barrnap] ERROR: nhmmer failed to run
#55 opened Jan 29, 2021 by nick-youngblut
3
calling two overlapping sequences separate partial 16S sequences
#57 opened May 4, 2021 by ileleiwi
please add option to force overwrite .fai index during, or automatically delete fai file after barrnap run
#58 opened May 14, 2021 by jvollme
barrnap-v0.9 debian package has incomplete database
#59 opened Aug 2, 2021 by thackl
2
Fail if Bedtools issues a fasta normalization error
#60 opened Aug 17, 2021 by jdwinkler-lanzatech
barrnap doesn't create any output
#61 opened Mar 24, 2022 by neelam19051
Annotate rRNA genes containing gaps of Ns enhancement
#1 opened May 21, 2014 by sjackman
@tseemann
2
HMM db incorrect location
#72 opened Feb 14, 2025 by Middle-Author-Bioinformatics
1
ProTip! no:milestone will show everything without a milestone.