Note_for_running_JSNeat.txt

Note for running JSNeat
1. How to configure hyper-parameters in JSNeat 
	- Goto utils.Constants

numberOfThread = 160; // the number thread
enableFuncNameEdge = true; // use function name as an edge of the stargraph
THRESHOLD = 0.8; // threshold of stargraph matching
TOPK_RESULT = 30; // display top K result in output
TOPK_BEAMSEARCH = 30; // beam size
usingNormalizationAllPair = true; // normalization association score for 

usingOnlyVarVarOnBS = true; // using only var-var associaion score when beamsearch

usingTokenizedFunctionName = false; // using tokenization for function name
usingTokenizedVarName = false; // using tokenzization for variable name


task = true; // using function name to recover
singleVar = true; // using single usage to recover
multiVar = true; // using multiple usage to recover

usingDataFromTraining = false;  // split testing data from training data

// this is for 10-folds cross-vadidation
startIndexInTraining = 0;
numberOfTrainingFolds = 9;
// using small data
usingOnly18kTraining = false;
}

2. Configure data
	- Change the directory for training/testing in mainRecover.MainRecover

	  InputData2 = "/home/nmt140230/RecoverJSName/GitTestData/"; // testing data
	  TrainingData2 = "/home/nmt140230/RecoverJSName/GitTrainData";  // training data
	  TrainingFileList = "./resources/tmp/trainingFileList.txt"; // list of traingin file
	  cacheFolder = "./resources/cache/"; // save cache when running

	  tmpOutput = "./resources/tmp/tmp.txt"; // output of recovered names
	  tmpOutputAccuracy = "./resources/tmp/tmpAccuracy.txt"; // accuracy report
	  tmpOutputNoBS = "./resources/tmp/tmp_noBS.txt"; // accuracy report without Beamsearch
	  tmpOutputAccuracyNoBS = "./resources/tmp/tmpAccuracy_noBS.txt"; // accuracy report without beamsearch
	  tmpCache_Association = "./resources/tmp/tmpCacheAssociation.txt"; // cache of association
	  tmpAnalysis_VarNumTesting = "./resources/tmp/tmpVarNumberTesting.txt"; // analysis
	  tmpRuningTime = "./resources/tmp/tmpRunningTime.txt"; // report running time
	  tmpAnalysisTrainingInfo = "./resources/tmp/tmpTrainingInfo.txt"; // training data analysis
	  tmpAnalysisTestingInfo = "./resources/tmp/tmpTestingInfo.txt"; // testing data analysis
	  tmpCurrentResolving = "./resources/tmp/tmpCurrentResolving.txt"; // record current status of resolving
	  tmp1EdgeSG = "./resources/tmp/tmp1EdgeSG.txt"; // record stargraph having 1 edge
	  tmp1Edge1VarFuncVsName = "./resources/tmp/tmp1Edge1VarFuncVsName.txt"; // record function which has 1 variable those stargraph has 1 edge
	  tmpPerfectResolved = "./resources/tmp/tmpPerfectResolved.txt";  // recored functions recovered perfectly variables
	  tmpTrainFunctioName = "./resources/tmp/tmpTrainFunctionName.txt"; // record training function name
	  tmpTestFunctioName = "./resources/tmp/tmpTestFunctionName.txt"; // record testing function name

3. How to run?
	- Run function main() in mainRecover.MainRecover

4. Output:
	- Output directory in set in mainRecover.MainRecover