-
Notifications
You must be signed in to change notification settings - Fork 16
/
Copy pathNEWS
115 lines (66 loc) · 3.07 KB
/
NEWS
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
r3PG 0.1.7
============
### Bug fixed
- Order of the morris output in the vignette example according to the mu.star. `err_biom_foliage` was wrongly calculated because of `Inf` during hte morris sensitivity. #101
### New function and data sets
### Major changes
### Minor changes
r3PG 0.1.6
============
### Bug fixed
- replace real(kind=8) with real(kind=kind(0.0d0)) in the more modern source files #97
### New function and data sets
### Major changes
### Minor changes
- re-structuring the repository and moving the files to the main directory #95
- adding GitHub CI
r3PG 0.1.5
============
### Bug fixed
- update of the `r3pg_ll` function in the vignette #89. There were wrong default parameters used.
- new mcmc run for the vignette.
### New function and data sets
### Major changes
- constrain the `frost_days` to the maximum days in month `prepare_climate` #68. Additionaly, in the main Fortran program f_frost is now calculated using the number of days per month (not standard 30 days as in original program). Consequently this lead to the deviation in the output of biomass to the third digit (see tests).
### Minor changes
- improved checks for the climate data (whether within hard ranges) #90
r3PG 0.1.4
============
### Bug fixed
- minor bug fixes for the `prepare_input.R`, `prepare_climate.R`, `prepare_sizeDist.R` #69
- ensuring that thinning values are withing plausible range `prepare_thinning.R` #75
- correct ordering of species in `prepare_thinning.R` #70
- insuring that the cumulative volume is not decreasing `md_3PG.f95` #63
- likelihood function in the vignette contained wrong error values `r3pg_ll` #54
- adjusting the vignette for the new `multidplyr` version #47
### New function and data sets
- `get_parameters` Gets parameters sets for species from published studies
- `param.db` Data.frame containing all parameters from the literature review.
- `prepare_site` to check whether the site data are within the plausible range #73.
- `prepare_species` to check whether the species data are within the plausible range #73.
### Minor changes
- adding the LICENSE
- renaming and exporting the `param.default`, `var.default` and `sizedist.default` internal data
r3PG 0.1.3
============
Bug fixed
- continue simulation even if one of the cohort was removed earlier (was only an issue if `correct_bias = 1`)
- simulation if one of the cohort appear later (sensu regeneration)
Minor changes
- re-arangement some of the variables in the `fortran` code (no effect on input/output)
r3PG 0.1.2
============
Minor changes
- check with valgrind for memory allocation.
r3PG 0.1.1
============
Minor changes
- adjusting `src/Makevars` to avoid failures with parallel makes
- small typos in the description files
r3PG 0.1.0
============
This is a first stable release available also on [CRAN](https://cran.r-project.org/web/packages/r3PG/index.html). The main functionality includes:
- simulating forest growth with 3-PGpjs (single species, even aged) and 3-PGmix (mixed, uneven aged)
- adjusting size distribution due to Jens inequality
- calculating delta13C
- preparing the input data