Install TFCE_mediation

Dependencies

TFCE_mediation should work with any UNIX based system. It has been tested on Ubuntu 14.04 and 16.04, Arch Linux, and OSX

Required

• If TkInter is not already installed: python-tk

For debian based systems: sudo apt-get install python-tk

Recommended

• FSL
• Neurodebian repository
• PIP

Recommended for parallelization:

• GNU Parallel

or

• For personal installation of HTCondor (i.e., Condor), you can follow the instructions here

Installation

PIP Install (recommended) The python dependencies will automatically be installed.

sudo pip install -U tfce-mediation

OR

Install from source (requires the following python packages: numpy, scipy, matplotlib, nibabel, cython, scikit-learn, joblib):

git clone https://github.com/trislett/TFCE_mediation.git
cd TFCE_mediation
sudo python setup.py install

Optional components for TFCE_mediation

TMI_Viewer: Vertex/Voxel Rendering for TMI files

Quick install:

For Ubuntu: sudo apt-get install vtk6 python-vtk

For OSX: brew install vtk

Install using PIP: sudo -H pip install -U tmi_viewer

TM_ADDONS: Support files for Geodesic FWHM smoothing, Blender Scenes for PLY images, and more.

Quick install:

git clone https://github.com/trislett/tm_addons.git
cd tm_addons
echo export TM_ADDONS=$PWD >> ~/.bashrc
bash download_9mm_geodesic_fwhm_files.sh