chapter4.tex

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\chapter{RESULTS\label{ch:results}}

these results prove ...

\section{Figures} \label{sec:figures}

The addfigure macro, used to typset \fig{fig:mlda4c}.  Note that the caption in the list of tables is different than the caption below the figure.
\begin{verbatim}
\addfigure{ML_LDA_4Chamber_NoTitle}
            {1}{Mouse LDA Plot With Four Chambers}
            {long caption.}
            {fig:mlda4c}
\end{verbatim}

  \addfigure{ML_LDA_4Chamber_NoTitle}
            {1}{Mouse LDA Plot With Four Chambers}
            {Linear Discriminant Analysis (LDA) of the four main compartments sampled from C57B1/6 strain mice (left panel) and CD-1 strain mice (right panel). Filled circles and open circles represent cohorts 1 and 2, respectively. Black dots represent the centroid for each cluster and ellipses indicate 1 standard deviation. The arrows show the flow of digesta between chambers. The plots were made using vote-determined genera shown in Tables \ref{tbl:fourchamberb} and \ref{tbl:fourchamberc}. The accuracies were 78.79\% (62.12\%)(left panel) and 63.93\% (65.57\%)(right panel). The first accuracies listed used the vote-determined genera, while the right side accuracies were for genera identified using `floating search within each fold'.}
            {fig:mlda4c}

  \clearpage 

\section{Tables} \label{sec:tables}

Tables can be built directly in your document, but you may find it useful to import data like a csv from an external source.

  % table for 4 chamber genera
  \begin{table}[!htb]
      \raggedright
      Tables \ref{tbl:fourchamberb} and \ref{tbl:fourchamberc} represent the genera identified using the voting process for the four chamber LDA plot visualized in \fig{fig:mlda4c}.\vskip 11pt
      \begin{minipage}{.5\linewidth}
        \centering
        \isucaption[4 Chamber - 14 Genera Strain B]{Strain B - 14 genera identified using the voting process}
        \label{tbl:fourchamberb}
        \addtable{mouse_longitudinal}{4chamber_B_14_TAXA}
      \end{minipage}%
      \begin{minipage}{.5\linewidth}
        \centering
        \isucaption[4 Chamber - 15 Genera Strain C]{Strain C - 15 genera identified using the voting process}
        \label{tbl:fourchamberc}
        \addtable{mouse_longitudinal}{4chamber_C_15_TAXA}
      \end{minipage}
  \end{table}


Example of a table directly in your document.

(see \tbl{tbl:tbl_1}) with multirow, multicolumn, and cline all in use.
\begin{table}[h!]
\isucaption[Letting the days go by]{Let the water hold me down}
\label{tbl:tbl_1}
\begin{center}
\begin{tabular}{|c||c|c|c||c|c|}
\hline
\multirow{2}{*}{Sample} & \multicolumn{3}{|c||}{Point Values} & \multirow{2}{*}{${\Delta}CF$}& \multirow{2}{*}{$\overline{{\Delta}CF}$} \\ \cline{2-4}
& $x$ & $y$ & $z$ &  & \\ \hline
\multirow{2}{*}{1} & 0.8191 & -0.2945 & 0.0000 & -- & -- \\ \cline{2-6}
 & -2.8080 & -0.7454 & -0.0390 & -0.0390 & -0.0390 \\ \hline 
\multirow{2}{*}{2} & -2.8080 & -0.7454 & -0.0390 & -- & -- \\ \cline{2-6}
 & -1.7669 & 0.0308 & -2.1083 & -2.0692 & -1.0541 \\ \hline 
 & 0.2503 & -1.6039 & -6.5415 & -0.0055 & -2.7268 \\ \hline
 \end{tabular}
\end{center}
\end{table}

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