The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:

Probabilistic O2PLS

Bayesian survival models for high-dimensional data

Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat

Metabolic Engineering Workbench

GenoCraft: A Comprehensive, User-Friendly Web-Based Platform for High-Throughput Omics Data Analysis and Visualization

Nara Marella

MicrobiomeStat Tutorial Repository: This is a comprehensive resource for learning how to use the MicrobiomeStat package. It provides a step-by-step guide to effectively analyze complex microbiome data.

Metabolic Drug Repurposing Pipeline

Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host with or without metabolomics data

GitHub Repository associated with the piQTL project (Mapping effects of genome-wide genetic variation to protein-protein interactions reveals molecular mechanisms of complex traits) [ Serohijos & Michnick Lab, Université de Montréal ]

📦 Tools for Omics Data Analysis

diversity-based enumeration of optimal context-specific metabolic networks using the cobrapy library

DecoFlex deconvolution method for Omic data implemented as DecoFlexR

MOFA (Multi-Omics Factor Analysis) is a computational framework and statistical method designed for the integration and analysis of multi-omics data.

Calculate correlation between two omics data

This repository is the code source for the RegOmics tool - Regulatory extraction for Omics data.

Analyses for "State of the field in multi-omics research: from computational needs to data mining and sharing"

Multimodal Variational Autoencoder dedicated to omics data integration

Multi-omics differential expression and integration using PPI networks