[Simulation question]: TsNucleus problem with provided configuration #66
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Simulation questionHello everyone. I have some questions regarding the default settings for the nucleus model uniformly packed using Hilbert Curves. These are the settings in question: s:Ge/Nucleus/HilbertCurveFileName = "supportFiles/HilbertPoints_iteration1.dat" The thing is that these settings give a nucleus with 11.4526 Gbp.
The docs indicate that the default configuration results in a nucleus with 6.078 Gbp. Could you please confirm if you observe the same values on your end? TOPAS-nBio categoryGeometry Code of Conduct
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If I remember correctly, the number of voxels that are actually contained in the nucleus, which is spherical, will add up to the correct number of DNA bps if you 'cut it out' of the cube that is filled by the Hilbert curve. This results in some 'broken' DNA ends at the nucleus surface but fills the nucleus with DNA and works well. |
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If I remember correctly, the number of voxels that are actually contained in the nucleus, which is spherical, will add up to the correct number of DNA bps if you 'cut it out' of the cube that is filled by the Hilbert curve. This results in some 'broken' DNA ends at the nucleus surface but fills the nucleus with DNA and works well.