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Add support for .cram inputs #6

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matthdsm opened this issue Sep 22, 2022 · 0 comments
Open

Add support for .cram inputs #6

matthdsm opened this issue Sep 22, 2022 · 0 comments

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@matthdsm
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Hi,

Is it possible to add support for cram (and possibly sam) inputs? Pysam readily supports this.
cfr
https://github.com/CenterForMedicalGeneticsGhent/WisecondorX/blob/ad25dce18bf3ed0c321fac955186fc9be193d49b/wisecondorX/convert_tools.py#L22-L33

Thanks
Matthias
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