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run-test.sh
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run-test.sh
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#!/bin/sh
# test should run quickly and quit.
FAST='dna/50KB_TestPattern.txt'
MEDIUM='dna/3MB_TestPattern.txt'
SLOW='dna/27MB_TestPattern.txt'
NETWORK='/Volumes/aminosee/dna/3MB_TestPattern.txt'
cd dna
test_do () {
echo $*
echo
nice aminosee $*
echo
}
aminosee
npm run genversion
echo trying to get to root of project...:
pwd
echo STOPPPING SERVER
aminosee --stop
echo STARTING SERVER TO RUN IN BACKGROUND
echo
aminosee --serve &
test_do "aminosee serve" --serve $MEDIUM --no-image &
sleep 1
lighthouse http://localhost:4321 --view --output-path="../test" --save-assets &
sleep 10
ESLINT="test/eslint-errors.txt"
touch $ESLINT
tail -f $ESLINT &
eslint src/aminosee-cli.js > $ESLINT
vows --spec --isolate
echo QUIET MODE
aminosee -q
echo aminosee $* --no-image
aminosee $* --no-image
test_do "asterix with debug on" * --no-image --debug --no-updates
test_do "KEYBOARD MODE" $FAST $* --no-image --peptide=Methionine --keyboard
test_do "regmarks" $FAST $* --reg
test_do "Networked cluster render test $NETWORK" -fv --peptide=Phenylalanine $FAST $NETWORK $MEDIUM $*
test_do "Test use of --maxpix=5000000" --maxpix=5000000 -v $SLOW $MEDIUM $FAST $NETWORK $*
test_do "Forced re-render verbose no image" -fv $MEDIUM $FAST $* --no-image
test_do "Demo -m4 no image" --demo -m4 --no-image $*
test_do "Test -m5" --demo -m4 -q $*
test_do "Test -m5" --test -m5
test_do "Test -m5" --test -p=Green -m4 $*
test_do 'Curious back walk bug debug' -d --debug $FAST Influenza-A-virus-H9N2-NC_004905.gbk Streptococcus_virus_2972.gbk $*
test_do "QUIET MODE WITH PARAMS" -q $* --no-image
test_do "VERBOSE MODE" -v -p=Lysine $* --no-image
test_do "USING INCORRECT SINGLE DASH FOR -help" -help $* --no-image
test_do "THREE OF THE SAME FILE IN A ROW: $FAST WITH PEPTIDE=AMBER" $FAST $FAST $FAST --PEPTIDE=AMBER $* --no-image
test_do "Wonky caps aspartic_ACID" $FAST --force --peptide=aspartic_ACID $* --no-image
test_do "gluTAMIC_aCID" $FAST -fb --peptide="gluTAMIC_aCID" $* --no-image
test_do "PROGRESS BARS" $SLOW $MEDIUM $FAST $* --force --peptide=opal -q --progress --dnabg $* --no-image
test_do "GARBAGE FILENAMES FUZZING like txt.txt.txt etc" -q $SLOW actualFileToThelieftistoseeifbatchrendersthroughthis junk asdfadsf $FAST qwert txt.txt.txt $* --no-image
echo THE NEXT ONES RENDER NON-STANDARD
test_do "Triplet ACT Square ratio disable keyboard" --no-keyboard $FAST $MEDIUM --triplet=ACT --ratio=sqr $* --no-image
test_do "Triplet TTT and ochre was not designed to do both" $FAST --triplet=TTT --peptide=ochre --ratio=sqr $* --no-image
test_do "Triplet CAT ratio sqr" $FAST $MEDIUM --triplet=CAT --ratio=sqr $* --no-image
test_do "m5 Golden" $FAST $MEDIUM -m5 --ratio=gol $* --no-image
test_do "c100 Golden" $FAST $MEDIUM -c100 --ratio=golden $* --no-image
test_do "c100 Golden regmarks" $FAST $MEDIUM -c2 --regmarks --ratio=gol $* --no-image
# test_do "Amber" $FAST $* --no-image --force --no-updates -m7 --ratio=sqr --peptide=Amber
# test_do "Methionine" $FAST $* --no-image --no-updates -m5 --peptide=Methionine --ratio=sqr
# test_do " -m 8 --peptide=Cysteine" $* --no-image -m 8 --peptide=Cysteine
# test_do "-c 69 --ratio=GOLDEN --peptide=Tryptophan" $* --no-image -c 69 --ratio=GOLDEN --peptide=Tryptophan
# test_do "-c10" $SLOW $MEDIUM * -c10 -q -v --debug $* --no-image
# test_do " --ratio=GOL" $MEDIUM * $FAST --keyboard $* --ratio=GOL
# test_do "* $SLOW $MEDIUM" * $SLOW $MEDIUM -c10 -k $*
# test_do "GGG" $FAST $* --no-image --reg -t=ggg
# test_do "*" * $* --no-image &
echo
echo "-------------------------------------------"
echo "-------------------------------------------"
echo ABOUT TO START OPENING WINDOWS AROUND THE PLACE
echo "-------------------------------------------"
echo "-------------------------------------------"
echo
sleep 1
echo THIS SHOULD OPEN REPORT EVEN IF IT ALREADY EXISTS
test_do "html PROLINE" $* $FAST --html
nice aminosee --image -q --ratio=fix --peptide=Arginine $* --no-image
nice aminosee --help --no-image $* --no-image
nice aminosee --demo --no-html --explorer $* --no-image
# echo calibration TESTS ARE KNOWN TO BE BUGGY AT PRESENT:
test_do "Calibration" --test $* --no-image
# open http://localhost:4321 &
sleep 1
echo KILLING ALL AMINOSEE SERVERS IN 5 seconds
sleep 1
# clear
echo " =///"
echo "-------------------------------------------"
echo NEARLY COMPLETED TESTING FOR $* --no-image $6
echo "-------------------------------------------"
echo " =///"
# npm run gui &
# sleep 1
clear
aminosee --stop
echo Stopping server in 1 second
sleep 1
# killall node
killall aminosee.funk.nz
sleep 1
echo " =///"
echo "-------------------------------------------"
echo COMPLETED TESTING FOR $* --no-image $6
echo "-------------------------------------------"
echo " =///"
echo ALL TESTS NON-BLOCKING!
echo done
# echo
# echo will compile macOS binary in 2 minutes
# sleep 120
#
# npm run macos
# sleep 60
# ./build-gui.sh
sleep 1
trap 'exit 0' TERM
(killall -m tail 2>&1) >/dev/null
exit 0