@@ -168,21 +168,14 @@ jobs:
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## https://stat.ethz.ch/pipermail/bioc-devel/2020-April/016675.html
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## https://github.com/r-lib/remotes/issues/296
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## Ideally, all dependencies should get installed in the first pass.
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-
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- ## Manually install required packages
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- BiocManager::install("BiocStyle", ask = FALSE, update = TRUE, force = TRUE)
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- BiocManager::install("rmarkdown", ask = FALSE, update = TRUE, force = TRUE)
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- BiocManager::install("Spectra", ask = FALSE, update = FALSE, force = TRUE)
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- BiocManager::install("MsCoreUtils", ask = FALSE, update = FALSE, force = TRUE)
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-
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+
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## For running the checks
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message(paste('****', Sys.time(), 'installing rcmdcheck and BiocCheck ****'))
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install.packages(c("rcmdcheck", "BiocCheck"), repos = BiocManager::repositories())
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## Pass #1 at installing dependencies
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message(paste('****', Sys.time(), 'pass number 1 at installing dependencies: local dependencies ****'))
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remotes::install_local(dependencies = TRUE, repos = BiocManager::repositories(), build_vignettes = FALSE, upgrade = TRUE)
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-
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continue-on-error : true
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shell : Rscript {0}
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