CITATION.bib

% reference for the software itself
@article{2017SolislemusBastideAne_PhyloNetworks,
  author = {Sol{\'\i}s-Lemus, Claudia and Bastide, Paul and An{\'e}, C{\'e}cile},
  title = {PhyloNetworks: A Package for Phylogenetic Networks},
  journal = {Molecular Biology and Evolution},
  year = {2017},
  volume = {34},
  number = {12},
  pages = {3292-3298},
  doi = {10.1093/molbev/msx235},
}

% paper on the SNaQ method
@article{2016SolislemusAne_SNaQ,
  author = {Sol{\'\i}s-Lemus, Claudia and An{\'e}, C{\'e}cile},
  title = {Inferring Phylogenetic Networks with Maximum Pseudolikelihood under Incomplete Lineage Sorting},
  journal = {PLOS Genetics},
  year = {2016},
  volume = {12},
  number = {3},
  pages = {1-21},
  doi = {10.1371/journal.pgen.1005896},
}
% paper on phylogenetic comparative methods for continuous traits on networks
@article{2018Bastide_continuoustraitevolution,
  author = {Bastide, Paul and Sol{\'\i}s-Lemus, Claudia and Kriebel, Ricardo and William Sparks, K and An{\'e}, C{\'e}cile},
  title = {Phylogenetic Comparative Methods on Phylogenetic Networks with Reticulations},
  journal = {Systematic Biology},
  year = {2018},
  volume = {67},
  number = {5},
  pages = {800-820},
  doi = {10.1093/sysbio/syy033},
}
% paper on phylogenetic comparative methods for discrete traits on networks
@article{2020Karimi_baobab_discretetraitevolution,
  author = {Karimi, Nisa and Grover, Corrinne E and Gallagher, Joseph P and Wendel, Jonathan F and An{\'e}, C{\'e}cile and Baum, David A},
  title = {Reticulate Evolution Helps Explain Apparent Homoplasy in Floral Biology and Pollination in Baobabs (\textit{{Adansonia}}; {Bombacoideae}; {Malvaceae})},
  journal = {Systematic Biology},
  year = {2020},
  volume = {69},
  number = {3},
  pages = {462-478},
  doi = {10.1093/sysbio/syz073},
}
% paper on continuous traits with intraspecific variation
@article{2022Teo_intraspeciesvariation,
  author = {Teo, Benjamin and Rose, Jeffrey P. and Bastide, Paul and An{\'e}, C{\'e}cile},
  title = {Accounting for intraspecific variation in continuous trait evolution on a reticulate phylogeny},
  journal = {bioRxiv},
  year = {2022},
  doi = {10.1101/2022.05.12.490814},
  publisher = {Cold Spring Harbor Laboratory},
}