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Refactor: JSON dumping: owl-on-fhir -> bioontologies #1

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joeflack4 opened this issue Mar 25, 2023 · 0 comments
Open

Refactor: JSON dumping: owl-on-fhir -> bioontologies #1

joeflack4 opened this issue Mar 25, 2023 · 0 comments
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joeflack4 commented Mar 25, 2023 •
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Overview

Currently, I'm using bioontologies to run robot for me, and it returns Obographs JSON as in a python object (actually, I would be doing this, but I think I'm just calling robot directly still because of a bug related to #2). I brought this up with bioontologies, and we essentially agreed that I can submit a PR where a bioontologies function is implemented that will accept these same params that create the Obographs JSON, but also have an outpath param, and the result will be JSON saved to that path.

Currently this is already being done in owl-on-fhir, but it would be nice if bioontologies had that feature.

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@joeflack4 joeflack4 self-assigned this Mar 25, 2023
@joeflack4 joeflack4 added the enhancement New feature or request label Mar 25, 2023
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