DESCRIPTION

Package: tidySpatialWorkshop2024
Title: Tidy genomic and transcriptomic single-cell analyses
Version: 0.17.0
Authors@R: 
    c(
    person(given = "Stefano",
           family = "Mangiola",
           role = c("aut", "cre"),
           email = "mangiola.s@wehi.edu.au",
           comment = c(ORCID = "0000-0001-7474-836X"))
	   )
Description: Workflow for BioC conference showing tidy genomic
    and transcriptomic analyses, for a single-cell RNA-seq
    application
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
LazyDataCompression: xz
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.1
Depends:
    Biobase,
    R (>= 4.4.0)
Imports:
    Banksy,
    colorspace,
    cowplot,
    CuratedAtlasQueryR (>= 1.1.3),
    dittoSeq,
    dplyr,
    ExperimentHub,
    ggalt,
    ggplot2,
    ggspavis (>= 1.9.10),
    glue,
    here,
    HDF5Array,
    hoodscanR,
    magrittr,
    MoleculeExperiment,
    plotly,
    purrr,
    RColorBrewer,
    scater,
    scico,
    scran,
    SpatialExperiment,
    spatialLIBD,
    stringr,
    SubcellularSpatialData,
    tidybulk (>= 1.17.2),
    tidySingleCellExperiment (>= 1.15.2),
    tidySpatialExperiment,
    tidySummarizedExperiment (>= 1.15.0),
    tidyverse,
    SPOTlight,
    Seurat,
    ggcorrplot
Suggests:
    knitr,
    markdown,
    rmarkdown,
    pkgdown
Biarch: true
Remotes: 
    lawremi/rtracklayer,
    lmweber/ggspavis,
    stemangiola/tidySummarizedExperiment,
    william-hutchison/tidySpatialExperiment,
    stemangiola/tidybulk,
    stemangiola/tidygate,
    stemangiola/CuratedAtlasQueryR
URL: https://tidyomics.github.io/tidySpatialWorkshop2024
BugReports: https://github.com/tidyomics/tidySpatialWorkshop2024/issues/new/choose
VignetteBuilder: knitr
DockerImage: ghcr.io/tidyomics/tidySpatialWorkshop2024:latest