New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

[FEATURE REQUEST] Minimum overlap expressed as a percentage #89

Open

Alex-Nesta opened this issue Jun 16, 2021 · 0 comments

Alex-Nesta commented Jun 16, 2021

Please add an option to express min overlap as a percentage. This is done in other tools like bedtools.

See -f and -F:

-f | Minimum overlap required as a fraction of A. Default is 1E-9 (i.e. 1bp).
-F | Minimum overlap required as a fraction of B. Default is 1E-9 (i.e., 1bp).

https://bedtools.readthedocs.io/en/latest/content/tools/intersect.html

Context

This feature is great when intersecting coordinates of various widths. At times, percentage is better than an absolute number.

The text was updated successfully, but these errors were encountered:

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment