-
Notifications
You must be signed in to change notification settings - Fork 22
250 lines (229 loc) · 9.53 KB
/
build_and_test.yml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
name: CI
on:
push:
# paths-ignore:
# - 'CHANGELOG.md'
pull_request:
schedule:
- cron: "0 11 * * *"
jobs:
skip_duplicate:
runs-on: ubuntu-latest
outputs:
should_skip: ${{ steps.skip_check.outputs.should_skip }}
steps:
- id: skip_check
uses: fkirc/skip-duplicate-actions@master
with:
github_token: ${{ github.token }}
concurrent_skipping: never
skip_after_successful_duplicate: true
paths_ignore: '["**/README.md", "**/docs/**"]'
do_not_skip: '["pull_request", "schedule"]'
test-conda:
name: Test on Conda
needs: skip_duplicate
if: ${{ needs.skip_duplicate.outputs.should_skip == 'false' }}
strategy:
matrix:
os: ["ubuntu-latest", "macos-latest"]
python-version: [3.11]
fail-fast: false
runs-on: ${{ matrix.os }}
steps:
- name: Checkout
uses: actions/checkout@v2
- name: Cache conda
uses: actions/cache@v2
with:
path: ~/conda_pkgs_dir
key: conda-${{ matrix.os }}-python-${{ matrix.python-version }}-${{ hashFiles('environment-ci-new.yml') }}
- name: Setup Miniconda
uses: conda-incubator/setup-miniconda@v2
with:
auto-update-conda: true
auto-activate-base: false
activate-environment: test_env
python-version: ${{ matrix.python-version }}
channels: conda-forge, xspecmodels, threeml, defaults
environment-file: ci/environment.yml
mamba-version: "*"
- name: Init Env
shell: bash -l {0}
run: |
# Make sure we fail in case of error
if [[ ${{matrix.os}} == ubuntu-latest ]];
then
miniconda_os=Linux
compilers="gcc_linux-64 gxx_linux-64"
else # osx
miniconda_os=MacOSX
compilers="clang_osx-64 clangxx_osx-64 gfortran_osx-64"
fi
echo "HOME= ${HOME}"
echo "Python version: ${{matrix.python-version}}"
mamba install ${compilers} pytest codecov pytest-cov git astromodels threeML numba reproject root flake8
- name: Conda list
shell: bash -l {0}
run: |
conda list
- name: install it
shell: bash -l {0}
run: |
pip install -e .
- name: Lint with flake8
shell: bash -l {0}
run: |
# stop the build if there are Python syntax errors or undefined names
flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
- name: test it
shell: bash -l {0}
run: |
python -m pytest -vv
env:
OMP_NUM_THREADS: 1
MKL_NUM_THREADS: 1
NUMEXPR_NUM_THREADS: 1
MPLBACKEND: "Agg"
test-master:
name: Test with master threeML/astromodels
needs: skip_duplicate
if: ${{ needs.skip_duplicate.outputs.should_skip == 'false' }}
strategy:
matrix:
os: ["ubuntu-latest", "macos-latest"]
python-version: [3.11]
fail-fast: false
runs-on: ${{ matrix.os }}
steps:
- name: Checkout
uses: actions/checkout@v2
- name: Cache conda
uses: actions/cache@v2
with:
path: ~/conda_pkgs_dir
key: conda-${{ matrix.os }}-python-${{ matrix.python-version }}-${{ hashFiles('environment-ci-new.yml') }}
- name: Setup Miniconda
uses: conda-incubator/setup-miniconda@v2
with:
auto-update-conda: true
auto-activate-base: false
activate-environment: test_env
python-version: ${{ matrix.python-version }}
channels: conda-forge, xspecmodels, threeml, defaults
environment-file: ci/environment.yml
mamba-version: "*"
- name: Init Env
shell: bash -l {0}
run: |
# Make sure we fail in case of error
if [[ ${{matrix.os}} == ubuntu-latest ]];
then
miniconda_os=Linux
compilers="gcc_linux-64 gxx_linux-64"
else # osx
miniconda_os=MacOSX
compilers="clang_osx-64 clangxx_osx-64 gfortran_osx-64"
fi
echo "HOME= ${HOME}"
echo "Python version: ${{matrix.python-version}}"
mamba install pytest codecov pytest-cov git astromodels threeML numba reproject root flake8
pip uninstall astromodels threeML -y
pip install git+https://github.com/threeml/astromodels.git
pip install git+https://github.com/threeml/threeML.git
- name: Conda list
shell: bash -l {0}
run: |
conda list
- name: install it
shell: bash -l {0}
run: |
pip install -e .
- name: Lint with flake8
shell: bash -l {0}
run: |
# stop the build if there are Python syntax errors or undefined names
flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
- name: test it
shell: bash -l {0}
run: |
python -m pytest -vv
env:
OMP_NUM_THREADS: 1
MKL_NUM_THREADS: 1
NUMEXPR_NUM_THREADS: 1
MPLBACKEND: "Agg"
test-dev:
name: Test with dev threeML/astromodels
needs: skip_duplicate
if: ${{ needs.skip_duplicate.outputs.should_skip == 'false' }}
strategy:
matrix:
os: ["ubuntu-latest", "macos-latest"]
python-version: [3.11]
fail-fast: false
runs-on: ${{ matrix.os }}
steps:
- name: Checkout
uses: actions/checkout@v2
- name: Cache conda
uses: actions/cache@v2
with:
path: ~/conda_pkgs_dir
key: conda-${{ matrix.os }}-python-${{ matrix.python-version }}-${{ hashFiles('environment-ci-new.yml') }}
- name: Setup Miniconda
uses: conda-incubator/setup-miniconda@v2
with:
auto-update-conda: true
auto-activate-base: false
activate-environment: test_env
python-version: ${{ matrix.python-version }}
channels: conda-forge, xspecmodels, threeml, defaults
environment-file: ci/environment.yml
mamba-version: "*"
- name: Init Env
shell: bash -l {0}
run: |
# Make sure we fail in case of error
if [[ ${{matrix.os}} == ubuntu-latest ]];
then
miniconda_os=Linux
compilers="gcc_linux-64 gxx_linux-64"
else # osx
miniconda_os=MacOSX
compilers="clang_osx-64 clangxx_osx-64 gfortran_osx-64"
fi
echo "HOME= ${HOME}"
echo "Python version: ${{matrix.python-version}}"
mamba install pytest codecov pytest-cov git astromodels threeML numba reproject root flake8
pip uninstall astromodels threeML -y
pip install git+https://github.com/threeml/astromodels.git@dev
pip install git+https://github.com/threeml/threeML.git@dev
- name: Conda list
shell: bash -l {0}
run: |
conda list
- name: install it
shell: bash -l {0}
run: |
pip install -e .
- name: Lint with flake8
shell: bash -l {0}
run: |
# stop the build if there are Python syntax errors or undefined names
flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
- name: test it
shell: bash -l {0}
run: |
python -m pytest -vv
env:
OMP_NUM_THREADS: 1
MKL_NUM_THREADS: 1
NUMEXPR_NUM_THREADS: 1
MPLBACKEND: "Agg"