tox.ini

# content of: tox.ini , put in same dir as setup.py
[tox]
envlist = format,lint,pytest
# envlist = format,flake8,pytest  # Use this when COMPPROT-2993 is solved. It should be used by devs before commit.

[testenv]
basepython = python3
deps = -rrequirements.txt
envdir = {toxworkdir}/run
skip_install = true

[testenv:black]
envdir = {toxworkdir}/black
deps = black==22.3.0
commands =
    {envpython} -m black {posargs}

[testenv:flake8]
envdir = {toxworkdir}/flake
deps = flake8==3.9.2
commands =
    {envpython} -m flake8 {posargs}

[testenv:pytest]
pip_pre = true
skip_install = false
envdir = {toxworkdir}/test
deps =
    {[testenv]deps}
    pytest==6.2.5
    pytest-cov==2.8.1
    pytest-custom-exit-code==0.3.0
extras = tests
commands =
    {envpython} -m pytest -s --junitxml=test_result_junit.xml --cov=pyproteininference --cov-report=term --cov-report=xml --cov-branch --suppress-no-test-exit-code {posargs}

[testenv:format]
envdir = {[testenv:black]envdir}
deps = {[testenv:black]deps}
commands = {[testenv:black]commands} . --exclude=/(\.direnv|\.eggs|\.git|\.hg|\.mypy_cache|\.nox|\.tox|\.venv|venv|\.svn|_build|buck-out|build|dist|__pypackages__)/ --check

[testenv:lint]
envdir = {[testenv:flake8]envdir}
deps = 
    {[testenv:flake8]deps}
    importlib-metadata==4.13.0
commands = {[testenv:flake8]commands} --format=pylint --exit-zero --output-file=flake8.out --tee

[testenv:test]
pip_pre = true
skip_install = false
envdir = {[testenv:pytest]envdir}
deps = {[testenv:pytest]deps}
extras = {[testenv:pytest]extras}
commands = {[testenv:pytest]commands} tests/

[testenv:build-dist]
skipsdist = True
skip_install = True
deps =
     -U
     setuptools>=42
     wheel
     setuptools_scm[toml]>=3.4
commands = python setup.py sdist