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predict appears to work fine with pspline when there are no strata terms. The termplot indicates that the spline fit is reasonable; it is just predict output that appears to be incorrect.
The text was updated successfully, but these errors were encountered:
I forgot to mention that this appears to works OK with newdata, which I guess is the most common use-case. A workaround is to supply the original data via the newdata argument, i.e.: predict(testSpline, newdata = df1, type="expected")
This gives a total expected of 165.2 (not quite the same, but close enough for most purposes).
Sorry to drip-feed information, but I found that there is no problem when using splines::bs or splines::ns. The problem appears to be confined to pspline in coxph with strata. That is my workaround for the time being, though I would rather use pspline if I could.
Test using R 4.4.0 and survival 3.5-8
predict appears to work fine with pspline when there are no strata terms. The termplot indicates that the spline fit is reasonable; it is just predict output that appears to be incorrect.
The text was updated successfully, but these errors were encountered: