DESCRIPTION

Package: rnaseqDTU
Title: RNA-seq workflow for differential transcript usage following Salmon quantification
Version: 1.17.0
Date: 2018-06-27
Authors@R: c(person(role=c("aut", "cre"), "Michael", "Love", email = "michaelisaiahlove@gmail.com"),
             person(role=c("aut"), "Charlotte", "Soneson"),
             person(role=c("aut"), "Rob", "Patro"))
Description: RNA-seq workflow for differential transcript usage (DTU) following
             Salmon quantification. This workflow uses Bioconductor packages
	     tximport, DRIMSeq, and DEXSeq to perform a DTU analysis
	     on simulated data. It also shows how to use stageR to perform
	     two-stage testing of DTU, a statistical framework to screen
	     at the gene level and then confirm which transcripts within
	     the significant genes show evidence of DTU.
Depends: R (>= 3.5.0),
         DRIMSeq,
	 DEXSeq,
	 stageR,
	 DESeq2,
	 edgeR,
	 rafalib,
	 devtools
License: Artistic-2.0
LazyData: true
VignetteBuilder: knitr
biocViews: Workflow, GeneExpressionWorkflow, ImmunoOncologyWorkflow
Suggests: knitr, rmarkdown
NeedsCompilation: no
URL: https://github.com/mikelove/rnaseqDTU/
Workflow: TRUE
RoxygenNote: 6.0.1