From 59f36ed9e856ab07b2fb6a19aaeea4763a49bef0 Mon Sep 17 00:00:00 2001
From: Erik Leppo <Erik.Leppo@tetratech.com>
Date: Thu, 16 Jul 2020 14:36:30 -0400
Subject: [PATCH] v1.1.0.9003

Update help file for occassional bad file import; Issue #40
---
 DESCRIPTION                                    |  2 +-
 NEWS                                           |  8 +++++++-
 NEWS.md                                        |  8 +++++++-
 NEWS.rmd                                       |  6 ++++++
 data-raw/ShinyHelp.Rmd                         | 10 +++++++++-
 inst/shiny-examples/baytrendsmap/global.R      |  2 +-
 .../baytrendsmap/www/ShinyHelp.html            | 18 ++++++++++++++++--
 7 files changed, 47 insertions(+), 7 deletions(-)

diff --git a/DESCRIPTION b/DESCRIPTION
index 9951d32..a17160e 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,7 +1,7 @@
 Package: baytrendsmap
 Title: Shiny App to Create Maps on-the-Fly from Output of the Baytrends Package
 Description: Shiny app to create maps on-the-fly from output of the baytrends package.
-Version: 1.1.0.9002
+Version: 1.1.0.9003
 Authors@R: c(
   person("Erik W.", "Leppo", email="Erik.Leppo@tetratech.com", role=c("aut","cre")),
   person("Jon","Harcum", role="ctb"))
diff --git a/NEWS b/NEWS
index c621f4b..bcae003 100644
--- a/NEWS
+++ b/NEWS
@@ -4,7 +4,13 @@ NEWS
 
 <!-- NEWS.md is generated from NEWS.Rmd. Please edit that file -->
 
-    #> Last Update: 2020-07-16 13:55:41
+    #> Last Update: 2020-07-16 14:32:07
+
+# baytrendsmap 1.1.0.9003
+
+Released - 2020-07-16
+
+  - Update help file for occassional bad file import; Issue \#40
 
 # baytrendsmap 1.1.0.9002
 
diff --git a/NEWS.md b/NEWS.md
index c621f4b..bcae003 100644
--- a/NEWS.md
+++ b/NEWS.md
@@ -4,7 +4,13 @@ NEWS
 
 <!-- NEWS.md is generated from NEWS.Rmd. Please edit that file -->
 
-    #> Last Update: 2020-07-16 13:55:41
+    #> Last Update: 2020-07-16 14:32:07
+
+# baytrendsmap 1.1.0.9003
+
+Released - 2020-07-16
+
+  - Update help file for occassional bad file import; Issue \#40
 
 # baytrendsmap 1.1.0.9002
 
diff --git a/NEWS.rmd b/NEWS.rmd
index 1eee262..98591f4 100644
--- a/NEWS.rmd
+++ b/NEWS.rmd
@@ -19,6 +19,12 @@ knitr::opts_chunk$set(
 ```{r LastUpdate, echo = FALSE}
 cat(paste0("Last Update: ",Sys.time()))
 ```
+baytrendsmap 1.1.0.9003
+===========
+Released - 2020-07-16
+
+* Update help file for occassional bad file import; Issue #40
+
 baytrendsmap 1.1.0.9002
 ===========
 Released - 2020-07-16
diff --git a/data-raw/ShinyHelp.Rmd b/data-raw/ShinyHelp.Rmd
index 684619d..7509a75 100644
--- a/data-raw/ShinyHelp.Rmd
+++ b/data-raw/ShinyHelp.Rmd
@@ -33,7 +33,15 @@ This option allows the user to upload a file created from  [baytrends](https://C
 
 + Select the file to upload and click **Open** from the file selection dialogue window.  
 
-Before continuing, make sure the data file has loaded into the app. That is, wait for the blue progress bar to read Upload complete. A data table will also appear in the main window when the upload is complete. If the imported data are not in the proper format, then a “red” error message will appear in the main window instead of a data table.
+Before continuing, make sure the data file has loaded into the app. That is, wait 
+for the blue progress bar to read "Upload complete". A data table will also appear 
+in the main window when the upload is complete. If the imported data are not in 
+the proper format, then a “red” error message will appear in the main window 
+instead of a data table.
+
+If instead of a blue progress bar with "Upload complete" you get a red bar with 
+an error message then the file did not load properly.  Edit your file by sorting 
+it by a column (Station ID seems to always work) then resave and retry the upload.
 
 # 2. Filtered Data
 
diff --git a/inst/shiny-examples/baytrendsmap/global.R b/inst/shiny-examples/baytrendsmap/global.R
index cfcdc4e..6e34456 100644
--- a/inst/shiny-examples/baytrendsmap/global.R
+++ b/inst/shiny-examples/baytrendsmap/global.R
@@ -1,7 +1,7 @@
 # Shiny Global File
 
 #pkgver <- packageVersion("baytrendsmap") # does not work on Shinyapps.io
-pkgver <- "1.1.0.9002"
+pkgver <- "1.1.0.9003"
 
 # Packages
 suppressMessages(library(shiny, quietly = TRUE, warn.conflicts = FALSE))
diff --git a/inst/shiny-examples/baytrendsmap/www/ShinyHelp.html b/inst/shiny-examples/baytrendsmap/www/ShinyHelp.html
index dd956e0..f501c2d 100644
--- a/inst/shiny-examples/baytrendsmap/www/ShinyHelp.html
+++ b/inst/shiny-examples/baytrendsmap/www/ShinyHelp.html
@@ -13,6 +13,19 @@
 
 <title>Navigating the baytrendsmap Shiny App</title>
 
+<script>// Pandoc 2.9 adds attributes on both header and div. We remove the former (to
+// be compatible with the behavior of Pandoc < 2.8).
+document.addEventListener('DOMContentLoaded', function(e) {
+  var hs = document.querySelectorAll("div.section[class*='level'] > :first-child");
+  var i, h, a;
+  for (i = 0; i < hs.length; i++) {
+    h = hs[i];
+    if (!/^h[1-6]$/i.test(h.tagName)) continue;  // it should be a header h1-h6
+    a = h.attributes;
+    while (a.length > 0) h.removeAttribute(a[0].name);
+  }
+});
+</script>
 <script>/*! jQuery v1.11.3 | (c) 2005, 2015 jQuery Foundation, Inc. | jquery.org/license */
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@@ -362,7 +375,7 @@
 
 
 <h1 class="title toc-ignore">Navigating the baytrendsmap Shiny App</h1>
-<h4 class="date">2020-06-24 17:11:07</h4>
+<h4 class="date">2020-07-16 14:29:49</h4>
 
 </div>
 
@@ -385,7 +398,8 @@ <h3>1b. Load user file</h3>
 <li><p>Click <strong>Browse</strong> to select a user-created <a href="https://CRAN.R-project.org/package=baytrends">baytrends</a> output file.</p></li>
 <li><p>Select the file to upload and click <strong>Open</strong> from the file selection dialogue window.</p></li>
 </ul>
-<p>Before continuing, make sure the data file has loaded into the app. That is, wait for the blue progress bar to read Upload complete. A data table will also appear in the main window when the upload is complete. If the imported data are not in the proper format, then a “red” error message will appear in the main window instead of a data table.</p>
+<p>Before continuing, make sure the data file has loaded into the app. That is, wait for the blue progress bar to read “Upload complete”. A data table will also appear in the main window when the upload is complete. If the imported data are not in the proper format, then a “red” error message will appear in the main window instead of a data table.</p>
+<p>If instead of a blue progress bar with “Upload complete” you get a red bar with an error message then the file did not load properly. Edit your file by sorting it by a column (Station ID seems to always work) then resave and retry the upload.</p>
 </div>
 </div>
 <div id="filtered-data" class="section level1">