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Performance wrapper

Andrea Telatin edited this page Oct 26, 2021 · 6 revisions

Using a wrapper and a 11Mb test BAM file:

Command Mean [ms] Min [ms] Max [ms] Relative
covtobed example_data/panel_01.bam 555.9 ± 24.9 536.9 611.1 1.00
./covtobed.py example_data/panel_01.bam 612.8 ± 7.8 599.1 624.9 1.10 ± 0.05
cat example_data/panel_01.bam | covtobed 576.7 ± 31.1 553.5 642.0 1.04 ± 0.07
cat example_data/panel_01.bam | ./covtobed.py 654.2 ± 32.6 629.5 719.1 1.18 ± 0.08
./covtobed.pl example_data/panel_01.bam 613.8 ± 8.8 602.3 624.6 1.10 ± 0.05
cat example_data/panel_01.bam | ./covtobed.pl 633.7 ± 12.2 619.9 657.2 1.14 ± 0.06
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