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Performance wrapper
Andrea Telatin edited this page Oct 26, 2021
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Using a wrapper and a 11Mb test BAM file:
Command | Mean [ms] | Min [ms] | Max [ms] | Relative |
---|---|---|---|---|
covtobed example_data/panel_01.bam |
555.9 ± 24.9 | 536.9 | 611.1 | 1.00 |
./covtobed.py example_data/panel_01.bam |
612.8 ± 7.8 | 599.1 | 624.9 | 1.10 ± 0.05 |
cat example_data/panel_01.bam | covtobed |
576.7 ± 31.1 | 553.5 | 642.0 | 1.04 ± 0.07 |
cat example_data/panel_01.bam | ./covtobed.py |
654.2 ± 32.6 | 629.5 | 719.1 | 1.18 ± 0.08 |
./covtobed.pl example_data/panel_01.bam |
613.8 ± 8.8 | 602.3 | 624.6 | 1.10 ± 0.05 |
cat example_data/panel_01.bam | ./covtobed.pl |
633.7 ± 12.2 | 619.9 | 657.2 | 1.14 ± 0.06 |
Covtobed - Wiki - a simple tool to extract BED coverage tracks from BAM files