diff --git a/workflow/rules/gatk_mutect2_calling_meta.smk b/workflow/rules/gatk_mutect2_calling_meta.smk index 0c1eb81..8f3bf0d 100644 --- a/workflow/rules/gatk_mutect2_calling_meta.smk +++ b/workflow/rules/gatk_mutect2_calling_meta.smk @@ -108,7 +108,7 @@ use rule gatk_calculate_contamination from gatk_mutect2_calling with: use rule gatk_learn_read_orientation_model from gatk_mutect2_calling with: input: - "tmp/gatk/mutect2/{species}.{build}.{release}.{datatype}/{sample}.f1r2.tar.gz", + f1r2="tmp/gatk/mutect2/{species}.{build}.{release}.{datatype}/{sample}.f1r2.tar.gz", output: temp( "tmp/gatk/learnreadorientationmodel/{species}.{build}.{release}.{datatype}/{sample}.tar.gz"