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Meta-analysis: param-file generator #16

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swvanderlaan opened this issue Aug 7, 2018 · 1 comment
Open

Meta-analysis: param-file generator #16

swvanderlaan opened this issue Aug 7, 2018 · 1 comment
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enhancement-high High-priority enhancement

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@swvanderlaan
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Add in params-file generator (cohort-name, lambda [after QC], avg. sample size, beta-correction factor) 🚧
If you have many cohorts (10+) or many (sub-)meta-analyses creating the param-file by hand can be a nuisance. We should make a perl/python script (probably fastest) to print out these things in one go...

@swvanderlaan swvanderlaan added the enhancement-high High-priority enhancement label Aug 7, 2018
@swvanderlaan swvanderlaan self-assigned this Aug 7, 2018
@xEmz
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xEmz commented May 31, 2023

An .sh master script with a parameter for file for the pathway for each cohort (so kind of like the .filest.list) and then a parameter for where the lambda gets calculated, a parameter for the N column.

I'll try this next.

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