diff --git a/R/functions.R b/R/functions.R index d55fde13..09937d08 100755 --- a/R/functions.R +++ b/R/functions.R @@ -2259,7 +2259,7 @@ get_reduced_dimensions_UMAP_bulk <- of_samples = TRUE, transform = log1p, scale = TRUE, - calculate_for_pca_dimensions = 20, + calculate_for_pca_dimensions = min(20, top), ...) { if(!is.null(calculate_for_pca_dimensions) & ( diff --git a/R/functions_SE.R b/R/functions_SE.R index 5f067aec..1e671c03 100755 --- a/R/functions_SE.R +++ b/R/functions_SE.R @@ -419,7 +419,7 @@ get_reduced_dimensions_UMAP_bulk_SE <- of_samples = TRUE, transform = log1p, scale = NULL, # This is only a dummy argument for making it compatibble with PCA - calculate_for_pca_dimensions = 20, + calculate_for_pca_dimensions = min(20, top), ...) { # Comply with CRAN NOTES . = NULL