eQTL summary for a variant view

[grosscol]

Answers the questions:

• Is the variant in an eQTL credible set?
• What genes does it affect?
• What tissues was it found in?
• What direction is the effect (per gene-tissue) ?

Feature is done when:

• A data summary card is presented on the variant page.
• Data summary card indicates "no known eQTL" when there is no eQTL data for the variant.
• Data summary care indicates information when variant is present in eQTL data:
  • Tissue
  • Gene
  • PIP

[grosscol]

Sketch of info cards to add to variant view

[shawnkru]

I think this is great at showing the data available at broad stroke style display

[grosscol]

There are some edge cases to handle with the way the UI queries and presents data.

1. An rs id may have multiple chrom-pos-ref-alt. E.g. rs376393219 that shows up as C-CA and CA-C. The workaround for this is to link to the variant page from the gene and region views using the chrom-pos-ref-alt instead of rs id.
2. Some eQTLs have many phenotypes which may result in dozens of rows per eQTL. In order to accommodate those in the info card, the styling overflow-y: auto and a max-height will be applied to make the content scrollable after 5 or so entries.