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all: plosaccepted
arxiv:
pdflatex ss3sim-ms-arxiv
pdflatex ss3sim-ms-arxiv
pdflatex ss3sim-ms-arxiv
plosaccepted:
pdflatex ss3sim-ms-plos.tex
pdflatex ss3sim-ms-plos.tex
pdflatex ss3sim-ms-plos.tex
plossubmit:
pandoc ~/Dropbox/ms/ss3sim-response/ss3sim-response.md -o ss3sim-response.tex
pdflatex ss3sim-ms
#pdflatex ss3sim-ms
rm ss3sim-response.tex
cp ss3sim-ms.pdf ~/Dropbox/Public/
plos:
pandoc -S --no-wrap --bibliography=ss3sim-ms.bib --natbib ss3sim-ms.md -o manuscript.tex
perl -p -i -e "s/Fig. /Fig.~/g" manuscript.tex
perl -p -i -e "s/citep/cite/g" manuscript.tex
perl -p -i -e "s/citet/cite/g" manuscript.tex
perl -p -i -e "s/e\.g\. /e\.g\.~/g" manuscript.tex
perl -p -i -e "s/i\.e\. /i\.e\.~/g" manuscript.tex
perl -p -i -e "s/vs. /vs.~/g" manuscript.tex
perl -p -i -e "s/No. /No.~/g" manuscript.tex
perl -p -i -e "s/\\\section/\\\section\*/g" manuscript.tex
perl -p -i -e "s/\\\subsection/\\\subsection\*/g" manuscript.tex
perl -p -i -e "s/Andre Punt/Andr\\\'{e} Punt/g" manuscript.tex
pandoc ~/Dropbox/ms/ss3sim-response/ss3sim-response.md -o ss3sim-response.tex
pdflatex ss3sim-ms
bibtex ss3sim-ms
pdflatex ss3sim-ms
pdflatex ss3sim-ms
rm ss3sim-response.tex
cp ss3sim-ms.pdf ~/Dropbox/Public/
diff:
#cp manuscript-plos.tex ms-temp.tex
#perl -p -i -e "s/\\\textsf{R}/R/g" ms-temp.tex
#perl -p -i -e "s/\\\textbf{ss3sim}/ss3sim/g" ms-temp.tex
#perl -p -i -e "s/\\\textbf{r4ss}/r4ss/g" ms-temp.tex
latexdiff ss3sim-first-submission.tex ss3sim-ms-for-diff.tex > ss3sim-ms-diff.tex
pdflatex ss3sim-ms-diff
#pdflatex ss3sim-ms-diff
letter:
xelatex ss3sim-letter
bib:
pdflatex ss3sim-ms
bibtex ss3sim-ms
pdflatex ss3sim-ms
pdflatex ss3sim-ms
clean:
rm *.log
rm *.aux
rm *.bbl
rm *.blg
docx:
pandoc -S --bibliography=ss3sim-ms.bib --csl=plos.csl --reference-docx=reference.docx ss3sim-ms.md -o ss3sim-ms.docx
mv ss3sim-ms.docx ~/Dropbox/Public/
rft:
latex2rtf ss3sim-ms.tex
mv ss3sim-ms.rtf ~/Dropbox/Public/
md:
pandoc -S --bibliography=ss3sim-ms.bib --csl=plos.csl ss3sim-ms.md -o ss3sim-ms-with-refs.md
cleanbib:
bibtool ss3sim-ms.bib -s > ss3sim-ms2.bib
mv ss3sim-ms2.bib ss3sim-ms.bib
vignette:
./knit
pandoc -S -N ss3sim-vignette.md -o ss3sim-vignette.pdf
rm ss3sim-vignette.md