Added dummy T1w data to compute MTsat

jcohenadad · jcohenadad · commit 713fcb6fc40f · 2020-09-03T17:55:56.000-04:00
diff --git a/mt/README.md b/mt/README.md
@@ -18,6 +18,8 @@ sct_segment_graymatter -i mt1.nii.gz -s mt1_seg.nii.gz -vertfile label/template/
 # binarize segmentation
 sct_maths -i mt1_gmseg_manual.nii.gz -thr 0.5 -o mt1_gmseg_goldstandard.nii.gz 
 sct_maths -i mt1_gmseg_goldstandard.nii.gz -bin -o mt1_gmseg_goldstandard.nii.gz 
+# dummy T1w data (to compute MTsat)
+sct_maths -i mt0.nii.gz -div 1.5 -o t1w.nii.gz
 ~~~~
 
 
diff --git a/mt/mt0.json b/mt/mt0.json
@@ -0,0 +1,6 @@
+{
+	"FlipAngle": 9,
+	"EchoTime": 0.002001,
+	"RepetitionTime": 0.030
+}
+
diff --git a/mt/mt1.json b/mt/mt1.json
@@ -0,0 +1,6 @@
+{
+	"FlipAngle": 9,
+	"EchoTime": 0.002001,
+	"RepetitionTime": 0.030
+}
+
diff --git a/mt/t1w.json b/mt/t1w.json
@@ -0,0 +1,6 @@
+{
+	"FlipAngle": 15,
+	"EchoTime": 0.002001,
+	"RepetitionTime": 0.015
+}
+
diff --git a/mt/t1w.nii.gz b/mt/t1w.nii.gz
