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improve errors/warnings for large searches #585

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ctb opened this issue Jan 12, 2025 · 0 comments
Open

improve errors/warnings for large searches #585

ctb opened this issue Jan 12, 2025 · 0 comments

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@ctb
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ctb commented Jan 12, 2025

on a large manysearch with many missing and empty files (atb / wort-sra), I'm getting errors like this:

Sketch loading error: EOF while parsing a value at line 1 column 0
WARNING: could not load sketches from path '/group/ctbrowngrp/irber/data/wort-data/wort-sra/sigs/ERR12544163.sig'
Sketch loading error: No such file or directory (os error 2)
WARNING: could not load sketches from path '/group/ctbrowngrp/irber/data/wort-data/wort-sra/sigs/SRR28044972.sig'

would be good to report

  • missing file + numbers
  • empty file + numbers
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