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Issues list

Data licenses enhancement New feature or request help wanted Extra attention is needed
#56 opened May 12, 2020 by tdiethe updated May 19, 2020
Add Bepler's model enhancement New feature or request help wanted Extra attention is needed wontfix This will not be worked on
#37 opened Feb 27, 2020 by DaHaiHuha updated Sep 27, 2020
tape-embed fails under PyTorch 1.5.0 bug Something isn't working wontfix This will not be worked on
#48 opened Apr 22, 2020 by wbogud updated Sep 27, 2020
Extend list of models by SeqVec enhancement New feature or request good first issue Good for newcomers help wanted Extra attention is needed wontfix This will not be worked on
#59 opened May 16, 2020 by ptynecki updated Sep 27, 2020
Cannot run the provided examples for creating new models bug Something isn't working
#96 opened Nov 20, 2020 by rocketsfallonrocketfalls updated Dec 17, 2020
A potential bug that may mask the start and stop tokens bug Something isn't working quick-fix This is an easy fix and should be done soon
#93 opened Nov 10, 2020 by lishen updated Dec 17, 2020
secondary structure dictionary documentation Improvements or additions to documentation quick-fix This is an easy fix and should be done soon
#61 opened May 20, 2020 by jcdelpiano updated Dec 17, 2020
Mapping to Pfam IDs documentation Improvements or additions to documentation quick-fix This is an easy fix and should be done soon
#75 opened Jul 10, 2020 by christophfeinauer updated Dec 17, 2020
Typo in README file documentation Improvements or additions to documentation quick-fix This is an easy fix and should be done soon
#97 opened Dec 9, 2020 by simoncorrea updated Dec 17, 2020
One-hot vocab
#109 opened Jul 5, 2021 by erika-alden updated Jul 27, 2021
Runtime error when trying to train on contact prediction task with FP16
#116 opened Sep 14, 2021 by pocuca updated Sep 14, 2021
EOFError: Ran out of input
#121 opened Oct 27, 2021 by ZhengYang-00 updated Oct 27, 2021
attention masks tokenizer
#126 opened Mar 21, 2022 by Ch-rode updated Mar 21, 2022
the size of pre-train model 's input data
#127 opened Mar 23, 2022 by willow-yll updated Mar 23, 2022
babbler-1900 model doesnt work!
#123 opened Feb 18, 2022 by hkoohy updated Apr 4, 2022
Distributed training does not exit properly after completion
#129 opened Jun 22, 2022 by Licko0909 updated Jun 22, 2022
Use TRRosetta to predict protein structure for a sequence
#130 opened Jul 28, 2022 by heavenAsk updated Jul 28, 2022
How to use embedding of BERT pretrain model for my classification task?
#133 opened Dec 16, 2022 by niloole updated Dec 16, 2022
wild type sequence for stability dataset
#131 opened Aug 15, 2022 by lzhangUT updated Jan 17, 2023
Usability questions
#135 opened Jan 27, 2023 by dMedinaO updated Jan 27, 2023
support OMP_NUM_THREADS for CPU limit
#136 opened Feb 6, 2023 by alexweisberg updated Feb 6, 2023
BUG
#137 opened Jun 19, 2024 by dezhi0730 updated Jun 19, 2024
Datasets are invalid and cannot be downloaded
#138 opened Sep 1, 2024 by KQDtianxiaK updated Sep 1, 2024
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