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I want to use Uniref30_2302_db , colabfold_envdb_202108_db and my own mmseqs databases to process MSA searching by colabfold_search command. I haven't seen any input argument to accept extra custom databases, so my question is how to merge my databases by mmseqs createdb and Uniref30_2302_db?
Current Behavior
Steps to Reproduce (for bugs)
ColabFold Output (for bugs)
Context
Is there any input argument to accept general mmseqs databases besides Uniref30_2302_db and colabfold_envdb_202108_db ?
Or how to merge custom databases to Uniref30 database? Can I follow this guide(https://github.com/sokrypton/ColabFold/wiki/Creating-expandable-search-databases) to build my own expandable search databases first, then use mmseqs mergedbs to combines them with Uniref30 db?
Or can you show me a better solution?
Your Environment
I am using Colabfold v1.5.0 on a A100 machine. In addtion, I have successfully run colabfold_search and colabfold_batch tasks with Uniref30_2302_db , colabfold_envdb_202108_db and my template.
Thank you in advance!
The text was updated successfully, but these errors were encountered:
Expected Behavior
I want to use
Uniref30_2302_db
,colabfold_envdb_202108_db
and my own mmseqs databases to process MSA searching bycolabfold_search
command. I haven't seen any input argument to accept extra custom databases, so my question is how to merge my databases bymmseqs createdb
andUniref30_2302_db
?Current Behavior
Steps to Reproduce (for bugs)
ColabFold Output (for bugs)
Context
Is there any input argument to accept general mmseqs databases besides
Uniref30_2302_db
andcolabfold_envdb_202108_db
?Or how to merge custom databases to Uniref30 database? Can I follow this guide(https://github.com/sokrypton/ColabFold/wiki/Creating-expandable-search-databases) to build my own expandable search databases first, then use
mmseqs mergedbs
to combines them with Uniref30 db?Or can you show me a better solution?
Your Environment
I am using Colabfold v1.5.0 on a A100 machine. In addtion, I have successfully run
colabfold_search
andcolabfold_batch
tasks withUniref30_2302_db
,colabfold_envdb_202108_db
and my template.Thank you in advance!
The text was updated successfully, but these errors were encountered: