diff --git a/README.md b/README.md index dc6e090..91bc96d 100644 --- a/README.md +++ b/README.md @@ -74,3 +74,13 @@ This research was funded by a United States National Science Foundation award (I iii. Output_data: Results of Fisher's exact and Mann Whitney U tests of GO-term enrichment among gene groups iv. Output_figures: Main-text and supplemental figures + D. D_ATACseq_QC (measurement of interexprimental variation in ATACseq peaks to QC integration of ATAC data) + + 1. D_ATACseq_QC.Rmd (linear regressions of ATACseq peak counts per genomic feature between experiments; calculation of + positional overlap in peaks between experiments) + i. Input data ('20_hpf'): this folder contains bed files of ATACseq peak locations from two experiments studying + blastula-stage *S. purpuratus* (SRA accession: GSE96927 and GSE160461) + ii. Code: D_ATACseq_QC.Rmd + iii. gene_info_table_header.txt: a datasheet used to resolve SPU_ID gene names and common gene names + iv. Strongylocentrotus_purpuratus.Spur_3.1.42.gff3: an annotation file for the Spur_3.1 genome +