diff --git a/README.md b/README.md index 21619af..a6999e0 100644 --- a/README.md +++ b/README.md @@ -41,7 +41,7 @@ paired-end reads | -2 | -reads2 | String | NULL | list of paired-end read _2 files (.fastq or .fq) | | -o | -output | String | NULL | output file name (.sam or .mr) | | -m | -mismatch | Integer | 6 | maximum allowed mismatches | -| -N | -number | Integer | 5000000 | number of reads to map in one loop | +| -N | -number | Integer | 1000000 | number of reads to map in one loop | | -a | -ambiguous | Boolean | false | randomly output one mapped position for ambiguous reads | | -u | -unmapped | Boolean | false | output unmapped reads | | -C | -clip | String | empty | clip the specified adaptor | diff --git a/Reports.md b/Reports.md deleted file mode 100644 index 50fe176..0000000 --- a/Reports.md +++ /dev/null @@ -1,10 +0,0 @@ -bsmapper -======== - -[_bsmapper_ experiment 1 report](https://docs.google.com/document/d/1A2btjankgUJ1e9qCXe1wN5bBVJo5b4v6K5tZKkXFRAA) - -[_bsmapper_ experiment 2 report](https://docs.google.com/document/d/1dc7cLfKYxkcGJhSj2r1UctY8xj7yS1ivfOWNT7micog) - -[_bsmapper_ experiment 3 report](https://docs.google.com/document/d/1c0SdxaC3PQCzVcDcztDs7fIlYrW5m2Mh_WFnB0AgAMI) - -[_bsmapper_ experiment 4 report](https://docs.google.com/document/d/18hmf9gjwzJTDc4OHpk7oih6zP_YV6QVz9r8FfMfMsPg)