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deadzones quitting without a beep when -p above certain threshold #3

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endrebak opened this issue Oct 14, 2016 · 0 comments
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@endrebak
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deadzones -s fa -k 50 -o data/deadzones/hg38.deadzones -p 40 data/genome/hg38/chroms

and then it quits after a minute. If I reduce the -p to 30 it keeps on going.

Also, how are deadzones computed? There are blazingly fast kmer-counters out there, I might be able to throw together a script for computing deadzones using one of them if you could explain how you do it.

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