diff --git a/ribotricer/cli.py b/ribotricer/cli.py index 23cb6ee..a7b8d6f 100644 --- a/ribotricer/cli.py +++ b/ribotricer/cli.py @@ -25,6 +25,7 @@ from .const import MINIMUM_VALID_CODONS_RATIO from .const import MINIMUM_READS_PER_CODON from .const import MINIMUM_DENSITY_OVER_ORF +from .const import META_MIN_READS from .count_orfs import count_orfs from .count_orfs import count_orfs_codon @@ -200,8 +201,7 @@ def prepare_orfs_cmd( @click.option( "--meta-min-reads", type=int, - # ADS: META_MIN_READS was detected as undefined by flake8 - default=META_MIN_READS, # noqa: F821 + default=META_MIN_READS, show_default=True, help="Minimum number of reads for a read length to be considered", )