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When some genes are constant, error in displaying TOM Plot #35

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avcarr2 opened this issue Oct 16, 2021 · 1 comment
Open

When some genes are constant, error in displaying TOM Plot #35

avcarr2 opened this issue Oct 16, 2021 · 1 comment

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@avcarr2
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avcarr2 commented Oct 16, 2021

I noticed that if you get the console warning saying (paraphrased), "Some genes are constant. Considering removing", you will also throw an error in the TOM Plot. The error indicates that the number of colors in the color bar on the left-hand side of the tom plot does not match the number of colors in the top bar.

I believe that it is related to the constant columns of genes, because the vignette data, which contains no constant measurements, works normally.

Need to implement a function that removes constant columns and see if that fixes the issue.

For now, the "beer-analysis" branch has disabled the TOM plots.

@avcarr2
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avcarr2 commented Oct 16, 2021

To verify that the issue is caused by genes with no variation in expression, I filtered the dataset that had constant genes, and MetaNetwork without errors.

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