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pubmed_literature_scan

This project aims to replicate the state-of-the-art neural network model presented in the paper "Neural Networks for Joint Sentence Classification in Medical Paper Abstracts."

The original paper addresses the challenge of efficiently classifying sentences in unstructured medical abstracts, providing a valuable tool for information extraction. Model 5 incorporates additional improvements to capture the relative positions of sentences in the abstracts.

Metrics

Model Architecture accuracy precision recall f1
Baseline (TF-IDF Multinomial Naive Bayes Classifier) 72.18 0.718 0.721 0.698
Conv1D 78.34 0.779 0.783 0.780
Univeral Sentence Encoder 69.78 0.697 0.697 0.694
Conv1D + Character Level Embeddings 66.16 0.652 0.661 0.651
Pretrained Token Embeddings + Character Level Embeddings 69.22 0.707 0.692 0.689
Pretrained Token Embeddings + Character Level Embeddings + Positional Embeddings (10% data) 78.65 0.798 0.786 0.783

Model 6 architecture

model

Model 5 architecture

model4