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./rocchio -matrixF /workspace/code/May28/matrix/cmb_combat_lm_corrected_exprData_Jan15_2016.csv -expF /workspace/code/May28/matrix/ovarian_recurrent.txt -delimiter COMMA -sampl
./rocchio -matrixF /workspace/code/May28/matrix/cmb_combat_lm_corrected_exprData_Jan15_2016.csv -expF /workspace/code/May28/matrix/ovarian_recurrent.txt -delimiter COMMA -samplOpt -sortF
./rocchio -matrixF /workspace/code/May28/matrix/cmb_combat_lm_corrected_exprData_Jan15_2016.csv -expF /workspace/code/May28/matrix/ovarian_recurrent.txt -delimiter COMMA
./rocchio -matrixF /workspace/code/May28/matrix/cmb_combat_lm_corrected_exprData_Jan15_2016.csv -delimiter COMMA -hist 10
./rocchio -matrixF /workspace/code/May28/matrix/feature_gene_scale -expF /workspace/code/Dec11/exp/CHIANG_LIVER_CANCER_SUBCLASS_PROLIFERATION_UP.txt -expF2 /workspace/code/Dec11/exp/CHIANG_LIVER_CANCER_SUBCLASS_PROLIFERATION_DN.txt -weighted -print 11070 15398
./rocchio -matrixF /workspace/code/May28/matrix/genomicMatrix -pos_neg -expF /workspace/code/May28/matrix/neg.txt -expF2 /workspace/code/May28/matrix/pos.txt -weighted -notransform
./rocchio -matrixF /workspace/code/May28/matrix/genomicMatrix -pos_neg -expF /workspace/code/May28/matrix/neg.txt -expF2 /workspace/code/May28/matrix/pos.txt -weighted -sortG -earlyT
./rocchio -matrixF /workspace/knowdata/KnowNets/KnowNet_0.3/LINCS/MCF7_data_sets/MCF7_drug.level4.mat.txt -expF /workspace/knowdata/KnowNets/KnowNet_0.3/LINCS/MCF7_data_sets/drug_exp_sets/BRD-A19037878.txt -delimiter TRANSPOSE -weighted -sampl
./rocchio -matrixF /workspace/knowdata/KnowNets/KnowNet_0.3/LINCS/MCF7_data_sets/MCF7_drug.level4.mat.txt -expF /workspace/knowdata/KnowNets/KnowNet_0.3/LINCS/MCF7_data_sets/drug_exp_sets/BRD-A19037878.txt -delimiter TRANSPOSE -weighted -print 289 526
./rocchio -matrixF /workspace/knowdata/KnowNets/KnowNet_0.3/LINCS/MCF7_data_sets/MCF7_drug.level4.mat.txt -delimiter TRANSPOSE -hist 10
./rocchio -matrixF /workspace/knowdata/KnowNets/KnowNet_0.3/LINCS/MCF7_data_sets/MCF7_drug.level4.mat.txt -expF /workspace/knowdata/KnowNets/KnowNet_0.3/LINCS/MCF7_data_sets/drug_exp_sets/BRD-A79768653.txt -delimiter TRANSPOSE -weighted -print 396 53 10
BRD-A79768653.txt
./rocchio -matrixF /workspace/code/May28/matrix/feature_gene_scale -expF /workspace/code/Dec11/exp/CHIANG_LIVER_CANCER_SUBCLASS_PROLIFERATION_UP.txt -expF2 /workspace/code/Dec11/exp/CHIANG_LIVER_CANCER_SUBCLASS_PROLIFERATION_DN.txt -weighted -sortG -earlyT
./rocchio -matrixF /workspace/code/May28/matrix/feature_gene_scale -expF /workspace/code/Dec11/exp/GRUETZMANN_PANCREATIC_CANCER_UP.txt -expF2 /workspace/code/Dec11/exp/GRUETZMANN_PANCREATIC_CANCER_DN.txt -weighted -print 3338 12745
weighted -print
338 12745