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summary.qmd
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summary.qmd
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# Summary
In this workshop, you have learned about 16S sequence-based taxonomic classification using online bioinforamtics tools, and how to plot and interpret experimental data using `R`.
These tools - `BLAST`, `silva`, and `R`, are the same research-level tools that biologists and bioinformaticians use on a daily basis.
::: { .callout-tip title="Things you have learned" }
By working through this material, you should now
- know how to use NCBI `BLAST` to obtain a taxonomic classification from a 16S sequence
- know how to use `silva` to obtain a taxonomic classification from a 16S sequence
- be able to load experimental data in `.csv` format into `R`
- be able to inspect the contents of a loaded dataset using `glimpse()` and `head()`
- know how to use `ggplot2` to generate a number of data visualisations, including
- scatterplots
- line plots
- facet plots
- be able to use `ggplot2` styling layers to modify the appearance of your graphs by
- changing the colours used in the plot
- modifying axis type
- changing axis labels
:::
::: { .callout-important }
If you haven't already, please don't forget to complete the formative assessments. These can be found on the workshop [MyPlace page](https://classes.myplace.strath.ac.uk/course/view.php?id=21632). You should complete them as part of the workshop.
- [MyPlace formative quiz 1]({{< var myplace.quiz1 >}}) - parts 2 and 3
- [MyPlace formative quiz 2]({{< var myplace.quiz2 >}}) - for the whole workshop
:::
## That's All, Folks!
Thank you for taking part in this workshop. We hope you enjoyed it, and found it interesting.
::: { .callout-caution title="Tell us about problems with the workshop, what you liked, or how you think it can be improved!"}
We would be very grateful to head feedback [by email](mailto:{{< var admin.email >}}) or through the [GitHub repository issues page]({{< var github.issues >}}).
:::