diff --git a/.bumpversion.cfg b/.bumpversion.cfg index 89aa570..034de41 100755 --- a/.bumpversion.cfg +++ b/.bumpversion.cfg @@ -1,5 +1,5 @@ [bumpversion] -current_version = 1.2.2 +current_version = 1.3.0 commit = True tag = False diff --git a/.github/workflows/pkgdown.yaml b/.github/workflows/pkgdown.yaml index 45a0339..4f88c8a 100644 --- a/.github/workflows/pkgdown.yaml +++ b/.github/workflows/pkgdown.yaml @@ -8,7 +8,7 @@ on: workflow_dispatch: env: - VERSION: '1.2.2' #versioned by bump2version + VERSION: '1.3.0' #versioned by bump2version name: pkgdown diff --git a/DESCRIPTION b/DESCRIPTION index 3360b3e..e4e908a 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,7 +1,7 @@ Package: oncoEnrichR Type: Package Title: Cancer-dedicated gene set interpretation -Version: 1.2.2 +Version: 1.3.0 Date: 2022-09-12 Authors@R: person(given = "Sigve", family = "Nakken", role = c("aut", "cre"), email = "sigven@ifi.uio.no", diff --git a/README.md b/README.md index ab7bc4b..d2df8b6 100644 --- a/README.md +++ b/README.md @@ -2,7 +2,7 @@ **oncoEnrichR** is an R package for functional interrogation of human gene lists in the context of cancer. The package leverages an extensive amount of prior molecular knowledge that allows for biological interpretation along multiple dimensions, both at the systems level and at the level of individual genes. -Web-based access to **oncoEnrichR** is available at [**https://oncotools.elixir.no**](https://oncotools.elixir.no/tool_runner?tool_id=galaxy-ntnu.bioinfo.no%2Ftoolshed_nels%2Frepos%2Fradmilko%2Foncoenrichr%2Foncoenrichr_wrapper%2F1.2.2) +Web-based access to **oncoEnrichR** is available at [**https://oncotools.elixir.no**](https://oncotools.elixir.no/tool_runner?tool_id=galaxy-ntnu.bioinfo.no%2Ftoolshed_nels%2Frepos%2Fradmilko%2Foncoenrichr%2Foncoenrichr_wrapper%2F1.3.0) **oncoEnrichR** is primarily intended for exploratory analysis and prioritization of a gene list (referred to here as **query set**) from high-throughput cancer biology experiments, e.g. CRISPR screens, protein proximity labeling, or gene expression profiling. The tool queries a number of high-quality data resources in order to assemble cancer-relevant annotations and analyses in an interactive report. diff --git a/pkgdown/index.md b/pkgdown/index.md index c0970e5..0e14eaf 100644 --- a/pkgdown/index.md +++ b/pkgdown/index.md @@ -21,7 +21,7 @@ data resources in order to assemble useful gene annotations and analyses in an interactive report (examples from the report shown below). Web-based access to **oncoEnrichR** is available at -[**https://oncotools.elixir.no**](https://oncotools.elixir.no/tool_runner?tool_id=galaxy-ntnu.bioinfo.no%2Ftoolshed_nels%2Frepos%2Fradmilko%2Foncoenrichr%2Foncoenrichr_wrapper%2F1.2.2) +[**https://oncotools.elixir.no**](https://oncotools.elixir.no/tool_runner?tool_id=galaxy-ntnu.bioinfo.no%2Ftoolshed_nels%2Frepos%2Fradmilko%2Foncoenrichr%2Foncoenrichr_wrapper%2F1.3.0)
diff --git a/vignettes/installation.Rmd b/vignettes/installation.Rmd index 78f6beb..e056380 100644 --- a/vignettes/installation.Rmd +++ b/vignettes/installation.Rmd @@ -8,7 +8,7 @@ vignette: > --- 1. `install.packages('devtools')` -2. `devtools::install_github('sigven/oncoEnrichR', ref = "v1.2.2")` +2. `devtools::install_github('sigven/oncoEnrichR', ref = "v1.3.0")` 3. `library(oncoEnrichR)`