From f11a4398cff2a8aeae3f583347151a15e87e9622 Mon Sep 17 00:00:00 2001 From: Sigve Nakken Date: Fri, 8 Nov 2024 20:59:35 +0100 Subject: [PATCH] gwas catalogue 2024-11-03 --- .bumpversion.cfg | 16 ---------------- .bumpversion.toml | 35 +++++++++++++++++++++++++++++++++++ R/sysdata.rda | Bin 1647 -> 1646 bytes data-raw/data-raw.R | 4 ++-- 4 files changed, 37 insertions(+), 18 deletions(-) delete mode 100755 .bumpversion.cfg create mode 100644 .bumpversion.toml diff --git a/.bumpversion.cfg b/.bumpversion.cfg deleted file mode 100755 index 61b9a71..0000000 --- a/.bumpversion.cfg +++ /dev/null @@ -1,16 +0,0 @@ -[bumpversion] -current_version = 1.3.2 -commit = True -tag = False - -[bumpversion:file:DESCRIPTION] -search = Version: {current_version} -replace = Version: {new_version} - -[bumpversion:file:inst/CITATION] -search = {current_version} -replace = {new_version} - -[bumpversion:file:.github/workflows/pkgdown.yaml] -search = VERSION: '{current_version}' -replace = VERSION: '{new_version}' diff --git a/.bumpversion.toml b/.bumpversion.toml new file mode 100644 index 0000000..7b170d7 --- /dev/null +++ b/.bumpversion.toml @@ -0,0 +1,35 @@ +[tool.bumpversion] +current_version = "1.3.2" +search = "{current_version}" +replace = "{new_version}" +message = "Bump version: {current_version} → {new_version}" +regex = false +ignore_missing_version = false +ignore_missing_files = false +commit = true +parse = """(?x) + (?P0|[1-9]\\d*)\\. + (?P0|[1-9]\\d*)\\. + (?P0|[1-9]\\d*) + (?:\\.(?P\\d+))? +""" + +serialize = [ + "{major}.{minor}.{patch}.{dev}", + "{major}.{minor}.{patch}", +] + +[[tool.bumpversion.files]] +filename = "DESCRIPTION" +search = "Version: {current_version}" +replace = "Version: {new_version}" + +[[tool.bumpversion.files]] +filename = "inst/CITATION" +search = "{current_version}" +replace = "{new_version}" + +[[tool.bumpversion.files]] +filename = ".github/workflows/pkgdown.yaml" +search = "VERSION: '{current_version}'" +replace = "VERSION: '{new_version}'" diff --git a/R/sysdata.rda b/R/sysdata.rda index 564477d91c8d5a33b2204ca522f2eb16d026284d..dd12eecfb53b1e911c0197c5d50695a8c413572e 100644 GIT binary patch literal 1646 zcmV-!29fzfT4*^jL0KkKSz+!!G5`f#|L6aE%p-7vf8c-r|M0*6|L{NnKmb4h2mk;C z00Gbio&(;}fbU1UqAkPH8lX&*Xl)475L5L%G{`XnO&L!?8lEZSVM9OxhN^m-O#)BR zG{DsLO^K9b834^phJa`Q000`Npc5ucLS&h!o{;pKX_HM28X5th13{xh5E7~Ws;895 z(@i}$zSWSiu;?frJ}RW*KCqh^nw6jYTP0?`DwV<5fj~`cvBfIVXC^V{Kl5p-wWnZ`gbd4dqzW)TrcTbOq6CxX;9=?wA5-Ib3vnCR!;$j8}j zq3TeLXj+WH6qzT_8ct?RuPiA#2^Oo)nm2i-0ImiAG6I~&n?-Mvn_ub3s>G3vKiZ2I zyuW4ZOwxGOcRuvG2(W`PS0HqY3i}deY0KBx4C)i73;vPGcShnM^jq ztU|MdR6%fbX`Z(3uJts>2OT+bM2t^{<^FyeC;_RoEaEWUjNzWmoA!^2FGOMvjz#kYjwCZnGu zR-cwz6nGHWKWD*3p7T&y+t?Jbx*PO0TC}EC?i)`A8O6xT+Ue?}D`oZfX*G8s(zUhf zBvDmIP6fjg{6>pV&m>0;y z_Ohx>+Y!fQb*t#Lj#5ET?8j-6(UD85Ewxet#^N9fSK21rSb5az7WDMhRaI45mb5T$ z4OgUZj}LKoqS}2H?s$%NoyV(X-VAjP%&>A_V8@_P486)7a9vKo6$Wlt79-?plA)(f zkfnmfdZ5=zf;h>Qgw~M52MNuYBOV8wsdX(&#D};6>;O9O1id-9bkg<|9w(M6iuKQT z22}NOz1oIyx7U}KO0Wdlp`PoMPGCdWjXi-t5g;@G0QuAK;MT~nkOt^BgMc$zgyS+K zAz1{jxr@mKVyRyJQW=vT!%dN@8PdA%C4G6Hua5ULFGARp8Un8f(U=lc)4=55L!FA- z!yQweX~UMmVvs2HRnn=KS!EwwK&&&-F(o;CsOj+f_WK?v&vMuB78eky&%czk;V*`>=*MLH*P|)jet0uZQqT=L?f5U!H-nb zm7eAUfj~Qyxm*PT095XiriADjw{>SCQzq9{tbhdy4(lX=bfIEmP=t2I%7b@-nlD+8 sb~cNp<6u_+43r}1;@Efpz$n%T)(F#}8ALKexP$&K_w}?tWM_0s>%m6JivNk@s-Uy@9L;o6_ zk_4uwcbrZwj3*ZQZAy?+fv!mW;P7CHAbhniy5&U=;rF4fGN{Y?7Bp~pcrC{Z)!`QX zGNyML+;gL+S0(nXU)yc1{+jjp>-ci2=nlX^5rhB%ln{gAun4boF+-^0&@u@ z4q+fmp|@EZtdPSA0o$h2s^HcV41z(Md6;Hv*>>5O280NW^#V!+>%h>jChtSEJUhQF zi8P;)l*A_;T8pVhH(&|`k4_UK4^dyr^EVM{D6G`%ef8Vr0)f&f1AjTmb6^j2tsJ>4 zj_MkPncUefNxpX!i+HCUXMBjZgAJKyXn?gPiJFJj-gHd*aTG}u(Ht0@zKmn%tjPl; z9p@Lcf-F_K)xi;4YnMR{j;vKFQln&+JW=K0t-nA8>eug5gUd5tvpr7EzDzJPP9zm^ z+coXN%=6GYv;q+7vj71#zo(pZaNnYD!#Zpg~D9q{Cw4I~6*V!_%P) zDHOcdo(dG{Q5&7+uGDGg^dVv7Vys|D#|tfMVwKwGvME6Br6u1g-sH*zASiN1*C#}z zE+H7=Jne;xBJ4X9V-{5Ay$D=j*``#v3WA75bJPF~G2C*Rh1BZKhrTChYl(?9F%6;> zhp~4sGgj7B00Sv(aYm7639+s-IWD$yLJVUeMNb80r0i7aVzD6;L==W?&E^sUfMv|i zF{5fVBC#A*K=w2D-lfT9L^}%LZcZvF1AzM(a&+6dqicJ$lXng%*L<_~Yv?+=Y4<9I z93Ao7o5u)R=m)YVE0L?EM8smYgBS%xuW81 zN7+r9kU2z{t;^hq~NSN!^OUoI`nJ<66=geEWceysLzoq{VTCDrt7o#S$VdgC?nH z#0|Rq0N~Z%N-UmXJdG)j31RGZX;|;HKWCB^7L|M$T5WxD?H` z86k(7$oV@w)yQLnmMZ5kp%oeiqnZ@`wxY{IN(>Ovu`!;)3X?!mCWz{2@7|i)D@lPE z=JYtEfB~NAEH2dhGQ^IW1|7*TLpdG+Ri6MTxEA=%R;fw}XIH4Aor@`aI`#3?7C_Lg z6q8Lct4hlp{F=pwm8tvP@l><;l9-YbLQ73Uf;gkN02m`|05bqE03O!g8)fIelNT01 zH0@*g_jq}tjy#<^239tXT;5JOy{TnLBb*z|uI9^OdY4K-D|*604hB|bZeI7))3op? zTsKDlTzjTJSXBc;qQ@G6*^Y8Bx*XXO7@&+q=SjIuQ)~>r;&?c#PnSxxJF%SGp{wAP z*1V6bjp={@a1e`DccytJFyJeM4c<0mL!)&xgKAhfd51)@n;g?=-HW5uEpdz&0OEP( z&xyoDF6XZs4AO%=hb9OHr#U^&2owO7cs){K9vLB)&26q4e diff --git a/data-raw/data-raw.R b/data-raw/data-raw.R index 042ec93..32cd694 100644 --- a/data-raw/data-raw.R +++ b/data-raw/data-raw.R @@ -6,8 +6,8 @@ source("data-raw/gwas_utils.R") options(timeout = 500000) -catalog_version_date <- '2024-09-22' -ebi_catalog_version_date <- '20240922' +catalog_version_date <- '2024-11-03' +ebi_catalog_version_date <- '20241103' fname_catalog_associations <- file.path( "data-raw",