mkdocs.yml

site_name: topoGenesis
repo_url: https://github.com/shervinazadi/topogenesis
repo_name: topoGenesis

nav:
  - Home: "index.md"
  - Installation: "installation.md"
  - Tutorials:
      - Basic:
          - Stencils: notebooks/stencil_functionalities.ipynb
      - Workflows:
          - Point Cloud Voxelization: notebooks/point_cloud_voxelization.ipynb
          - Mesh Sampling: notebooks/mesh_sampling.ipynb
          - Boolean Marching Cubes: notebooks/boolean_marching_cubes.ipynb
      - Simulations:
          - Cellular Automata: notebooks/cellular_automata.ipynb
          - ABM Random Walker: notebooks/random_walker.ipynb

  - API:
      - Data Structures:
          - Lattice: api/datastructures/lattice.md
          - Stencil: api/datastructures/stencil.md
          - Cloud: api/datastructures/cloud.md
      - "Geometry": "api/geometry.md"
  - About:
      - "License": "license.md"
      - "Citing": "citing.md"

theme:
  name: "material"
  palette:
    - scheme: slate
      primary: deep purple
      accent: deep purple
      toggle:
        icon: material/toggle-switch-off-outline
        name: Switch to dark mode
    - scheme: default
      primary: purple
      accent: purple
      toggle:
        icon: material/toggle-switch
        name: Switch to light mode

  icon:
    repo: fontawesome/brands/github

  features:
    - search.suggest
    - navigation.sections

plugins:
  - search:
      prebuild_index: true
  - mknotebooks:
      enable_default_jupyter_cell_styling: false
      enable_default_pandas_dataframe_styling: false
      # write_markdown: true
  - mkdocstrings:
      watch:
        - topogenesis
      handlers:
        python:
          selection:
            filters:
              - "!^_" # exlude all members starting with _

markdown_extensions:
  - codehilite
  - pymdownx.arithmatex:
      generic: true
  - toc:
      permalink: true

extra_css:
  - stylesheets/extra.css

extra_javascript:
  - javascripts/config.js
  - https://polyfill.io/v3/polyfill.min.js?features=es6
  - https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js