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coord_handler.py
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coord_handler.py
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import numpy as np
class CoordHandler():
def __init__(self, config):
self.config = config
self.batch_size = self.config["train_params"]["batch_size"]
self.micro_patch_size = self.config["data_params"]["micro_patch_size"]
self.macro_patch_size = self.config["data_params"]["macro_patch_size"]
self.full_image_size = self.config["data_params"]["full_image_size"]
self.coordinate_system = self.config["data_params"]["coordinate_system"]
self.c_dim = self.config["data_params"]["c_dim"]
self.ratio_macro_to_micro = self.config["data_params"]["ratio_macro_to_micro"]
self.ratio_full_to_micro = self.config["data_params"]["ratio_full_to_micro"]
self.num_micro_compose_macro = self.config["data_params"]["num_micro_compose_macro"]
self.cache = {
"const_centroid": {},
}
def sample_coord(self, num_extrap_steps=0):
if self.coordinate_system == "euclidean":
return self._euclidean_sample_coord(num_extrap_steps=num_extrap_steps)
elif self.coordinate_system == "cylindrical":
assert num_extrap_steps==0
return self._cylindrical_sample_coord()
else:
raise NotImplementedError()
def euclidean_coord_int_full_to_float_micro(self, i, ratio_full_to_micro, extrap_steps=0):
if extrap_steps>0: # Extrapolation training
ratio_original = ratio_full_to_micro - extrap_steps*2
return -1 + (i-extrap_steps) * 2 / (ratio_original - 1)
else:
return -1 + i * 2 / (ratio_full_to_micro - 1)
# def hyperbolic_coord_int_full_to_float_micro(self, i, ratio_full_to_micro):
# return -1 + i * 2 / ratio_full_to_micro
#
#
# def hyperbolic_theta_to_euclidean(self, angle_ratio, proj_func):
# p = proj_func(np.pi * angle_ratio)
# if (type(p) is float) or (len(p.shape)==0):
# p = p if abs(p) > 1e-6 else 0
# else:
# p[np.abs(p)<1e-6] = 0
# return p
def _gen_const_centroids(self, target, dim, num_extrap_steps=0, is_hyperbolic=False):
assert target in {"full", "macro"}
# Check if in cache
cache_key = (target, dim, num_extrap_steps, is_hyperbolic)
if cache_key in self.cache["const_centroid"]:
return self.cache["const_centroid"][cache_key]
const_centroid = []
if target=="full" and is_hyperbolic:
assert dim==1
num_patches = self.ratio_full_to_micro[dim] # Warn: -1 is the same location as 1 in 3D, so ignore 1 here
ratio_over_micro = self.ratio_full_to_micro[dim]
for i in range(num_patches):
coord = -1 + i * 2 / ratio_over_micro
const_centroid.append(coord)
elif target=="full":
num_pad_patch = (self.ratio_macro_to_micro[dim] - 1)
num_patches = self.ratio_full_to_micro[dim] - num_pad_patch + num_extrap_steps*2
ratio_over_micro = self.ratio_full_to_micro[dim]
for i in range(num_patches):
coord = -1 + (i-num_extrap_steps) * 2 / (ratio_over_micro - 1 - num_pad_patch)
const_centroid.append(coord)
else:
num_patches = self.ratio_macro_to_micro[dim]
ratio_over_micro = self.ratio_macro_to_micro[dim]
for i in range(num_patches):
coord = i / (ratio_over_micro - 1)
const_centroid.append(coord)
const_centroid = np.array(const_centroid)
self.cache["const_centroid"][cache_key] = const_centroid
return const_centroid
def _euclidean_sample_coord(self, num_extrap_steps=0):
const_centroid_x = self._gen_const_centroids(target="full", dim=0, num_extrap_steps=num_extrap_steps)
const_centroid_y = self._gen_const_centroids(target="full", dim=1, num_extrap_steps=num_extrap_steps)
const_micro_in_macro_x = self._gen_const_centroids(target="macro", dim=0)
const_micro_in_macro_y = self._gen_const_centroids(target="macro", dim=1)
# Random cropping position
ps = self.micro_patch_size
gs = self.macro_patch_size
m_ratio = self.ratio_macro_to_micro
valid_crop_size_x = self.full_image_size[0] - ps[0]
valid_crop_size_y = self.full_image_size[1] - ps[1]
macro_patch_center_range_x = self.full_image_size[0]-self.macro_patch_size[0]
macro_patch_center_range_y = self.full_image_size[1]-self.macro_patch_size[1]
num_pad_patch_x = (self.ratio_macro_to_micro[0] - 1)
num_pad_patch_y = (self.ratio_macro_to_micro[1] - 1)
d_macro_center_idx_x = np.random.randint(0, self.ratio_full_to_micro[0]-num_pad_patch_x+num_extrap_steps*2, self.batch_size)
d_macro_center_idx_y = np.random.randint(0, self.ratio_full_to_micro[1]-num_pad_patch_y+num_extrap_steps*2, self.batch_size)
d_macro_pos_x = np.array([const_centroid_x[i] for i in d_macro_center_idx_x]).reshape(-1, 1)
d_macro_pos_y = np.array([const_centroid_y[i] for i in d_macro_center_idx_y]).reshape(-1, 1)
# Wrap value to avoid numerical issue (e.g., 1.000001)
if num_extrap_steps==0:
d_macro_pos_x = np.clip(d_macro_pos_x, -1, 1)
d_macro_pos_y = np.clip(d_macro_pos_y, -1, 1)
d_macro_coord = np.concatenate([d_macro_pos_x, d_macro_pos_y], axis=1)
# Transform d global position ([-1, 1]) to patch position ([-1, 1])
g_micro_pos_x_proto = np.tile(np.expand_dims(d_macro_pos_x, 1), [1, self.num_micro_compose_macro, 1])
g_micro_pos_y_proto = np.tile(np.expand_dims(d_macro_pos_y, 1), [1, self.num_micro_compose_macro, 1])
g_micro_pos_x_l, g_micro_pos_y_l = [], []
gpc_x = macro_patch_center_range_x
gpc_y = macro_patch_center_range_y
for yy in range(self.ratio_macro_to_micro[1]):
for xx in range(self.ratio_macro_to_micro[0]):
idx = yy*m_ratio[0] + xx
T_x = const_micro_in_macro_x[xx]
T_y = const_micro_in_macro_y[yy]
g_micro_pos_x = ((g_micro_pos_x_proto[:,idx] + 1)/2 * gpc_x + (gs[0]/2) + (T_x*(gs[0]-ps[0])) - (m_ratio[0]/2)*ps[0]) / valid_crop_size_x * 2 - 1
g_micro_pos_y = ((g_micro_pos_y_proto[:,idx] + 1)/2 * gpc_y + (gs[1]/2) + (T_y*(gs[1]-ps[1])) - (m_ratio[1]/2)*ps[1]) / valid_crop_size_y * 2 - 1
g_micro_pos_x_l.append(g_micro_pos_x)
g_micro_pos_y_l.append(g_micro_pos_y)
g_micro_pos_x = np.concatenate(g_micro_pos_x_l, axis=1).reshape(-1, 1)
g_micro_pos_y = np.concatenate(g_micro_pos_y_l, axis=1).reshape(-1, 1)
g_micro_coord = np.concatenate([g_micro_pos_x, g_micro_pos_y], axis=1)
# Unused, put some trash values
c_angle_ratio = np.zeros_like(g_micro_pos_x)
return d_macro_coord, g_micro_coord, c_angle_ratio