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VCF spec 4.4 introduces the 'P' number for ploidy #25

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timothymillar opened this issue Jul 1, 2024 · 2 comments
Open

VCF spec 4.4 introduces the 'P' number for ploidy #25

timothymillar opened this issue Jul 1, 2024 · 2 comments
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vcf-4.4

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@timothymillar
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See the description of the PSL field https://samtools.github.io/hts-specs/VCFv4.4.pdf#subsubsection.1.6.2. This isn't defined explicitly as raised in samtools/hts-specs#705. However, it's implicitly the ploidy of the genotype call ("one for each allele specified in the GT").

This should be added to the VCF-Zarr spec for the ploidy dimension.
@timothymillar
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@tomwhite I can't seem to assign labels etc. here.

@tomwhite
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tomwhite commented Jul 4, 2024

@tomwhite I can't seem to assign labels etc. here.

I added you to the team so you should be able to now.

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