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Add a bgen_to_zarr function #16

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eric-czech opened this issue Aug 24, 2020 · 0 comments
Open

Add a bgen_to_zarr function #16

eric-czech opened this issue Aug 24, 2020 · 0 comments

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@eric-czech
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Reading bgen directly into a dask array (as our current reader does) is fundamentally limited by the lack of partitioning across samples in the underlying file format, just link plink and vcf.

Following @tomwhite's example in vcf_to_zarr (described briefly in limix/bgen-reader-py#30 (comment)), we need a similarly specialized routine for the bgen to zarr conversion.

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eric-czech added a commit to eric-czech/sgkit-bgen that referenced this issue Sep 22, 2020
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