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This repository has been archived by the owner on Oct 15, 2020. It is now read-only.
Reading bgen directly into a dask array (as our current reader does) is fundamentally limited by the lack of partitioning across samples in the underlying file format, just link plink and vcf.
Reading bgen directly into a dask array (as our current reader does) is fundamentally limited by the lack of partitioning across samples in the underlying file format, just link plink and vcf.
Following @tomwhite's example in vcf_to_zarr (described briefly in limix/bgen-reader-py#30 (comment)), we need a similarly specialized routine for the bgen to zarr conversion.
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