From e66dd5598274687cedac60bbcc2259314a9e28a5 Mon Sep 17 00:00:00 2001 From: marehr Date: Mon, 26 Jul 2021 11:35:11 +0200 Subject: [PATCH] [DOC] unresolved link to seqan3::align_cfg::gap configuration due to renaming (gap_cost_affine) --- doc/tutorial/pairwise_alignment/index.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/doc/tutorial/pairwise_alignment/index.md b/doc/tutorial/pairwise_alignment/index.md index b170492b59..d4894c5bda 100644 --- a/doc/tutorial/pairwise_alignment/index.md +++ b/doc/tutorial/pairwise_alignment/index.md @@ -186,7 +186,7 @@ positive value and the score for mismatch and gaps must be negative in order to \snippet doc/tutorial/pairwise_alignment/configurations.cpp gap_cost_affine To configure the scoring scheme and the gap scheme for the alignment algorithm you need to use the -seqan3::align_cfg::scoring_scheme and the seqan3::align_cfg::gap configurations. The +seqan3::align_cfg::scoring_scheme and the seqan3::align_cfg::gap_cost_affine configurations. The seqan3::align_cfg::scoring_scheme is mandatory - similarly to the alignment method configuration. It would be wrong to assume what the default scoring scheme should be. If you do not provide these configurations, the compilation will fail with a corresponding error message. Not providing the gap scheme is ok. In this case the default initialised