Specifically, if G is the graph inverse semigroup of Digraph([] , [1], [1]), then it generates the congruence with parts
[ [ All elements except ] , [ e_2 e_1 ^ -1] ]
Which is not closed, for instance (e_1 , e_2) * e_1^-1 = (e_1e_1^-1, e_2 e_1 ^ -1)
I will look further into this