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release-notes-1.4.0.html
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Release Notes - SEEK - Version 1.4.0
<h2> New Feature
</h2>
<ul>
<li>[<a href='https://jira-bsse.ethz.ch/browse/OPSK-906'>OPSK-906</a>] - project-specific defaults (sharing, licensing) set by project's admin
</li>
<li>[<a href='https://jira-bsse.ethz.ch/browse/OPSK-1254'>OPSK-1254</a>] - Allow site-wide default license to be specified
</li>
</ul>
<h2> Improvement
</h2>
<ul>
<li>[<a href='https://jira-bsse.ethz.ch/browse/OPSK-255'>OPSK-255</a>] - Upgrade to Rails 4
</li>
<li>[<a href='https://jira-bsse.ethz.ch/browse/OPSK-354'>OPSK-354</a>] - better to switch the arrow direction after closing the box
</li>
<li>[<a href='https://jira-bsse.ethz.ch/browse/OPSK-743'>OPSK-743</a>] - Use an better calendar for date & time selection
</li>
<li>[<a href='https://jira-bsse.ethz.ch/browse/OPSK-972'>OPSK-972</a>] - acts_as_annotatable and Seek::Tagging required
</li>
<li>[<a href='https://jira-bsse.ethz.ch/browse/OPSK-1151'>OPSK-1151</a>] - samples not shown on organism page
</li>
<li>[<a href='https://jira-bsse.ethz.ch/browse/OPSK-1196'>OPSK-1196</a>] - Improve person autocompleter thing
</li>
<li>[<a href='https://jira-bsse.ethz.ch/browse/OPSK-1213'>OPSK-1213</a>] - Include Events in the ISA graph
</li>
<li>[<a href='https://jira-bsse.ethz.ch/browse/OPSK-1214'>OPSK-1214</a>] - More descriptive tab titles
</li>
<li>[<a href='https://jira-bsse.ethz.ch/browse/OPSK-1232'>OPSK-1232</a>] - Shown as both a creator and contributor for an Assay
</li>
<li>[<a href='https://jira-bsse.ethz.ch/browse/OPSK-1233'>OPSK-1233</a>] - Cannot create a sample type with controlled vocab (Rails 4)
</li>
<li>[<a href='https://jira-bsse.ethz.ch/browse/OPSK-1243'>OPSK-1243</a>] - Store secret_key_base in filestore rather than using env variable
</li>
<li>[<a href='https://jira-bsse.ethz.ch/browse/OPSK-1253'>OPSK-1253</a>] - Long project lists are not displayd nicely in asset listing
</li>
<li>[<a href='https://jira-bsse.ethz.ch/browse/OPSK-1258'>OPSK-1258</a>] - Import datacite gem into main SEEK
</li>
<li>[<a href='https://jira-bsse.ethz.ch/browse/OPSK-1259'>OPSK-1259</a>] - JWS Online needs to know whether the model is constraint based or not
</li>
<li>[<a href='https://jira-bsse.ethz.ch/browse/OPSK-1273'>OPSK-1273</a>] - Rename owner_id to contributor_id for Assay
</li>
<li>[<a href='https://jira-bsse.ethz.ch/browse/OPSK-1274'>OPSK-1274</a>] - Show SEEK ID for Project and Person, and as a URI
</li>
</ul>
<h2> Bug
</h2>
<ul>
<li>[<a href='https://jira-bsse.ethz.ch/browse/OPSK-573'>OPSK-573</a>] - Stack level too deep when doing pubmed queries in development mode
</li>
<li>[<a href='https://jira-bsse.ethz.ch/browse/OPSK-1041'>OPSK-1041</a>] - URLs to the fairdomhub don't seem to be recognised as webpages
</li>
<li>[<a href='https://jira-bsse.ethz.ch/browse/OPSK-1195'>OPSK-1195</a>] - Sharing table should not show "download" column for non-downloadable (ISA) things
</li>
<li>[<a href='https://jira-bsse.ethz.ch/browse/OPSK-1201'>OPSK-1201</a>] - "Upload new version" button is hidden from non-managers
</li>
<li>[<a href='https://jira-bsse.ethz.ch/browse/OPSK-1217'>OPSK-1217</a>] - Unit order field needs renaming
</li>
<li>[<a href='https://jira-bsse.ethz.ch/browse/OPSK-1220'>OPSK-1220</a>] - Incorrect default permissions when selecting "Add a Study" for an investigation
</li>
<li>[<a href='https://jira-bsse.ethz.ch/browse/OPSK-1221'>OPSK-1221</a>] - No project permissions when creating an Assay
</li>
<li>[<a href='https://jira-bsse.ethz.ch/browse/OPSK-1222'>OPSK-1222</a>] - Clicking on the centre of the permissions matrix cells doesn't work.
</li>
<li>[<a href='https://jira-bsse.ethz.ch/browse/OPSK-1223'>OPSK-1223</a>] - New assay based on this one doesn't select the organism
</li>
<li>[<a href='https://jira-bsse.ethz.ch/browse/OPSK-1224'>OPSK-1224</a>] - Preview permissions doesn't make sense and is worded misleadingly
</li>
<li>[<a href='https://jira-bsse.ethz.ch/browse/OPSK-1225'>OPSK-1225</a>] - Preview of data file results breaks the drag and drop of favourite search
</li>
<li>[<a href='https://jira-bsse.ethz.ch/browse/OPSK-1227'>OPSK-1227</a>] - Error uploading avatars
</li>
<li>[<a href='https://jira-bsse.ethz.ch/browse/OPSK-1229'>OPSK-1229</a>] - Cannot set default sharing defaults for a project
</li>
<li>[<a href='https://jira-bsse.ethz.ch/browse/OPSK-1230'>OPSK-1230</a>] - Clicking "show x more" on the ISA graph doesn't work
</li>
<li>[<a href='https://jira-bsse.ethz.ch/browse/OPSK-1236'>OPSK-1236</a>] - Project selector doesn't revert to 'Select a project...'
</li>
<li>[<a href='https://jira-bsse.ethz.ch/browse/OPSK-1237'>OPSK-1237</a>] - Presentation title box is large
</li>
<li>[<a href='https://jira-bsse.ethz.ch/browse/OPSK-1238'>OPSK-1238</a>] - Auth table consistency stats don't display
</li>
<li>[<a href='https://jira-bsse.ethz.ch/browse/OPSK-1239'>OPSK-1239</a>] - Error when attempting to do an external search
</li>
<li>[<a href='https://jira-bsse.ethz.ch/browse/OPSK-1241'>OPSK-1241</a>] - Problem with local solr search
</li>
<li>[<a href='https://jira-bsse.ethz.ch/browse/OPSK-1246'>OPSK-1246</a>] - Incorrect string value: '\xE2\x97\x8F Wh...' for column 'description' when creating an event
</li>
<li>[<a href='https://jira-bsse.ethz.ch/browse/OPSK-1248'>OPSK-1248</a>] - Incorrectly sending error emails for ActionController::UnknownFormat
</li>
<li>[<a href='https://jira-bsse.ethz.ch/browse/OPSK-1250'>OPSK-1250</a>] - Store openbis metadata cache in filestore/, not tmp/
</li>
<li>[<a href='https://jira-bsse.ethz.ch/browse/OPSK-1251'>OPSK-1251</a>] - Problem with publications with the DOI registered as a full URL
</li>
<li>[<a href='https://jira-bsse.ethz.ch/browse/OPSK-1263'>OPSK-1263</a>] - organism page/ alphabetical order - missing letters
</li>
<li>[<a href='https://jira-bsse.ethz.ch/browse/OPSK-1268'>OPSK-1268</a>] - (Show All) contributor pop-up displays avatars in a column
</li>
<li>[<a href='https://jira-bsse.ethz.ch/browse/OPSK-1271'>OPSK-1271</a>] - Pagination broken
</li>
<li>[<a href='https://jira-bsse.ethz.ch/browse/OPSK-1275'>OPSK-1275</a>] - Prevent invalid URLs being added, both for new items and versions
</li>
<li>[<a href='https://jira-bsse.ethz.ch/browse/OPSK-1279'>OPSK-1279</a>] - ISA Graph boxes are often too small for the text
</li>
<li>[<a href='https://jira-bsse.ethz.ch/browse/OPSK-1280'>OPSK-1280</a>] - Autocomplete for creators and attributions isn't restricted to people
</li>
<li>[<a href='https://jira-bsse.ethz.ch/browse/OPSK-1281'>OPSK-1281</a>] - RDF for assets doesn't include creators
</li>
<li>[<a href='https://jira-bsse.ethz.ch/browse/OPSK-1282'>OPSK-1282</a>] - study does not load the correct default sharing policy for project
</li>
<li>[<a href='https://jira-bsse.ethz.ch/browse/OPSK-1286'>OPSK-1286</a>] - "Download" permission column missing from default policy form
</li>
<li>[<a href='https://jira-bsse.ethz.ch/browse/OPSK-1289'>OPSK-1289</a>] - User menu expands too wide when you are a member of a project with a long name
</li>
</ul>
<h2> Task
</h2>
<ul>
<li>[<a href='https://jira-bsse.ethz.ch/browse/OPSK-1242'>OPSK-1242</a>] - FAIRDOMHUb model types are out of sync
</li>
<li>[<a href='https://jira-bsse.ethz.ch/browse/OPSK-1245'>OPSK-1245</a>] - Investigate error email about missing sprockets when running AuthLookupJob
</li>
<li>[<a href='https://jira-bsse.ethz.ch/browse/OPSK-1255'>OPSK-1255</a>] - Merge datacite gem into SEEK code
</li>
<li>[<a href='https://jira-bsse.ethz.ch/browse/OPSK-1257'>OPSK-1257</a>] - Test the asset housekeeper behaviour
</li>
<li>[<a href='https://jira-bsse.ethz.ch/browse/OPSK-1260'>OPSK-1260</a>] - Error when trying to download JERM things when the server has gone
</li>
<li>[<a href='https://jira-bsse.ethz.ch/browse/OPSK-1261'>OPSK-1261</a>] - Investigate loading of ontologies in OWL format without having to convert to RDFXML
</li>
<li>[<a href='https://jira-bsse.ethz.ch/browse/OPSK-1265'>OPSK-1265</a>] - fairdomhub does not set content-length under some circumstances
</li>
<li>[<a href='https://jira-bsse.ethz.ch/browse/OPSK-1266'>OPSK-1266</a>] - Large file downloads take a while to start on fairdomhub
</li>
</ul>