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Pickling issues on macOS with dill #887

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timothy-nunn opened this issue Dec 16, 2024 · 3 comments
Open

Pickling issues on macOS with dill #887

timothy-nunn opened this issue Dec 16, 2024 · 3 comments
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bug Something isn't working

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@timothy-nunn
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Describe the bug
Assertion error occurs in pickle when running docs/notebooks/expected_improvement.pct.py on macOS.

To reproduce
Steps to reproduce the behaviour:

  1. Install trieste develop (25d2a03)
  2. cd docs/notebooks
  3. pip install -r constraints.txt
  4. python expected_improvement.pct.py

Expected behaviour
The example runs without crashing and creates two directories in the docs/notebooks:

  1. model_path
  2. results_path

System information

  • OS: macOS Sonoma 14.5
  • Python version: 3.10.13
  • Trieste version: 4.2.2 (25d2a03)
  • TensorFlow version: 2.16.2
  • GPflow version: 2.9.2

Additional context
The traceback:

(.venv) timothynunn@L0268-iMac notebooks % python expected_improvement.pct.py
2024-12-16 15:50:39.292166: I tensorflow/core/kernels/logging_ops.cc:171] Optimization completed without errors

query point: [0.54222484 0.15261818]
observation: [-1.04738646]
╒═════════════════════════╤══════════════════╤══════════════════╤═══════════╤═════════════╤═══════════╤═════════╤═════════════════════════════╕
│ name                    │ class            │ transform        │ prior     │ trainable   │ shape     │ dtype   │ value                       │
╞═════════════════════════╪══════════════════╪══════════════════╪═══════════╪═════════════╪═══════════╪═════════╪═════════════════════════════╡
│ GPR.mean_function.c     │ Parameter        │ Identity         │           │ True        │ ()        │ float64 │ 1.4175                      │
├─────────────────────────┼──────────────────┼──────────────────┼───────────┼─────────────┼───────────┼─────────┼─────────────────────────────┤
│ GPR.kernel.variance     │ Parameter        │ Softplus         │ LogNormal │ True        │ ()        │ float64 │ 3.5516                      │
├─────────────────────────┼──────────────────┼──────────────────┼───────────┼─────────────┼───────────┼─────────┼─────────────────────────────┤
│ GPR.kernel.lengthscales │ Parameter        │ Softplus         │ LogNormal │ True        │ (2,)      │ float64 │ [0.50765811 0.88904284]     │
├─────────────────────────┼──────────────────┼──────────────────┼───────────┼─────────────┼───────────┼─────────┼─────────────────────────────┤
│ GPR.likelihood.variance │ Parameter        │ Softplus + Shift │           │ False       │ ()        │ float64 │ 1.0000000116860993e-07      │
├─────────────────────────┼──────────────────┼──────────────────┼───────────┼─────────────┼───────────┼─────────┼─────────────────────────────┤
│ GPR.data[0]             │ ResourceVariable │                  │           │ False       │ (None, 2) │ float64 │ [[0.75563049, 0.81419373... │
├─────────────────────────┼──────────────────┼──────────────────┼───────────┼─────────────┼───────────┼─────────┼─────────────────────────────┤
│ GPR.data[1]             │ ResourceVariable │                  │           │ False       │ (None, 1) │ float64 │ [[1.69841...                │
╘═════════════════════════╧══════════════════╧══════════════════╧═══════════╧═════════════╧═══════════╧═════════╧═════════════════════════════╛
2024-12-16 15:50:48.028280: I tensorflow/core/kernels/logging_ops.cc:171] Optimization completed without errors

Traceback (most recent call last):
  File "/Users/timothynunn/trieste/docs/notebooks/expected_improvement.pct.py", line 289, in <module>
    result.save("results_path")
  File "/Users/timothynunn/trieste/trieste/bayesian_optimizer.py", line 329, in save
    record.save(record_path)
  File "/Users/timothynunn/trieste/trieste/bayesian_optimizer.py", line 138, in save
    dill.dump(self, f, dill.HIGHEST_PROTOCOL)
  File "/Users/timothynunn/trieste/.venv/lib/python3.10/site-packages/dill/_dill.py", line 336, in dump
    Pickler(file, protocol, **_kwds).dump(obj)
  File "/Users/timothynunn/trieste/.venv/lib/python3.10/site-packages/dill/_dill.py", line 620, in dump
    StockPickler.dump(self, obj)
  File "/opt/homebrew/Cellar/[email protected]/3.10.13_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/pickle.py", line 487, in dump
    self.save(obj)
  File "/opt/homebrew/Cellar/[email protected]/3.10.13_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/pickle.py", line 603, in save
    self.save_reduce(obj=obj, *rv)
  File "/opt/homebrew/Cellar/[email protected]/3.10.13_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/pickle.py", line 717, in save_reduce
    save(state)
  File "/opt/homebrew/Cellar/[email protected]/3.10.13_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/pickle.py", line 560, in save
    f(self, obj)  # Call unbound method with explicit self
  File "/Users/timothynunn/trieste/.venv/lib/python3.10/site-packages/dill/_dill.py", line 1251, in save_module_dict
    StockPickler.save_dict(pickler, obj)
  File "/opt/homebrew/Cellar/[email protected]/3.10.13_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/pickle.py", line 972, in save_dict
    self._batch_setitems(obj.items())
  File "/opt/homebrew/Cellar/[email protected]/3.10.13_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/pickle.py", line 998, in _batch_setitems
    save(v)
  File "/opt/homebrew/Cellar/[email protected]/3.10.13_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/pickle.py", line 560, in save
    f(self, obj)  # Call unbound method with explicit self
  File "/Users/timothynunn/trieste/.venv/lib/python3.10/site-packages/dill/_dill.py", line 1251, in save_module_dict
    StockPickler.save_dict(pickler, obj)
  File "/opt/homebrew/Cellar/[email protected]/3.10.13_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/pickle.py", line 972, in save_dict
    self._batch_setitems(obj.items())
  File "/opt/homebrew/Cellar/[email protected]/3.10.13_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/pickle.py", line 1003, in _batch_setitems
    save(v)
  File "/opt/homebrew/Cellar/[email protected]/3.10.13_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/pickle.py", line 603, in save
    self.save_reduce(obj=obj, *rv)
  File "/opt/homebrew/Cellar/[email protected]/3.10.13_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/pickle.py", line 717, in save_reduce
    save(state)
  File "/opt/homebrew/Cellar/[email protected]/3.10.13_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/pickle.py", line 560, in save
    f(self, obj)  # Call unbound method with explicit self
  File "/Users/timothynunn/trieste/.venv/lib/python3.10/site-packages/dill/_dill.py", line 1251, in save_module_dict
    StockPickler.save_dict(pickler, obj)
  File "/opt/homebrew/Cellar/[email protected]/3.10.13_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/pickle.py", line 972, in save_dict
    self._batch_setitems(obj.items())
  File "/opt/homebrew/Cellar/[email protected]/3.10.13_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/pickle.py", line 998, in _batch_setitems
    save(v)
  File "/opt/homebrew/Cellar/[email protected]/3.10.13_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/pickle.py", line 603, in save
    self.save_reduce(obj=obj, *rv)
  File "/opt/homebrew/Cellar/[email protected]/3.10.13_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/pickle.py", line 713, in save_reduce
    self._batch_setitems(dictitems)
  File "/opt/homebrew/Cellar/[email protected]/3.10.13_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/pickle.py", line 998, in _batch_setitems
    save(v)
  File "/opt/homebrew/Cellar/[email protected]/3.10.13_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/pickle.py", line 603, in save
    self.save_reduce(obj=obj, *rv)
  File "/opt/homebrew/Cellar/[email protected]/3.10.13_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/pickle.py", line 717, in save_reduce
    save(state)
  File "/opt/homebrew/Cellar/[email protected]/3.10.13_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/pickle.py", line 560, in save
    f(self, obj)  # Call unbound method with explicit self
  File "/Users/timothynunn/trieste/.venv/lib/python3.10/site-packages/dill/_dill.py", line 1251, in save_module_dict
    StockPickler.save_dict(pickler, obj)
  File "/opt/homebrew/Cellar/[email protected]/3.10.13_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/pickle.py", line 972, in save_dict
    self._batch_setitems(obj.items())
  File "/opt/homebrew/Cellar/[email protected]/3.10.13_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/pickle.py", line 998, in _batch_setitems
    save(v)
  File "/opt/homebrew/Cellar/[email protected]/3.10.13_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/pickle.py", line 603, in save
    self.save_reduce(obj=obj, *rv)
  File "/opt/homebrew/Cellar/[email protected]/3.10.13_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/pickle.py", line 692, in save_reduce
    save(args)
  File "/opt/homebrew/Cellar/[email protected]/3.10.13_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/pickle.py", line 560, in save
    f(self, obj)  # Call unbound method with explicit self
  File "/opt/homebrew/Cellar/[email protected]/3.10.13_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/pickle.py", line 902, in save_tuple
    save(element)
  File "/opt/homebrew/Cellar/[email protected]/3.10.13_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/pickle.py", line 560, in save
    f(self, obj)  # Call unbound method with explicit self
  File "/opt/homebrew/Cellar/[email protected]/3.10.13_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/pickle.py", line 842, in save_picklebuffer
    self.save_bytearray(m.tobytes())
  File "/opt/homebrew/Cellar/[email protected]/3.10.13_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/pickle.py", line 821, in save_bytearray
    self.memoize(obj)
  File "/opt/homebrew/Cellar/[email protected]/3.10.13_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/pickle.py", line 508, in memoize
    assert id(obj) not in self.memo
AssertionError
@timothy-nunn timothy-nunn added the bug Something isn't working label Dec 16, 2024
@uri-granta
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Collaborator

Thank you for raising this! Could you please try running pip install -r requirements.txt -c constraints.txt first in the notebooks directory and then again in the docs directory. Assuming the tutorial still fails, could you also specify which version of dill is being installed (or better yet, attach the output of pip freeze) as this may be a bad interaction with a third party package.

@timothy-nunn
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Author

Hi,

In order to run the command in the notebooks directory I have to comment out the box2d packages as these seem not to build on Mac (however I believe this should not cause an issue with this notebook).

Same problems occurs:

(.venv) timothynunn@L0268-iMac notebooks % python expected_improvement.pct.py 
2025-01-09 14:54:08.803338: I tensorflow/core/kernels/logging_ops.cc:171] Optimization completed without errors

query point: [0.54222475 0.15261832]
observation: [-1.04738646]
╒═════════════════════════╤══════════════════╤══════════════════╤═══════════╤═════════════╤═══════════╤═════════╤═════════════════════════════╕
│ name                    │ class            │ transform        │ prior     │ trainable   │ shape     │ dtype   │ value                       │
╞═════════════════════════╪══════════════════╪══════════════════╪═══════════╪═════════════╪═══════════╪═════════╪═════════════════════════════╡
│ GPR.mean_function.c     │ Parameter        │ Identity         │           │ True        │ ()        │ float64 │ 1.4175                      │
├─────────────────────────┼──────────────────┼──────────────────┼───────────┼─────────────┼───────────┼─────────┼─────────────────────────────┤
│ GPR.kernel.variance     │ Parameter        │ Softplus         │ LogNormal │ True        │ ()        │ float64 │ 3.5516                      │
├─────────────────────────┼──────────────────┼──────────────────┼───────────┼─────────────┼───────────┼─────────┼─────────────────────────────┤
│ GPR.kernel.lengthscales │ Parameter        │ Softplus         │ LogNormal │ True        │ (2,)      │ float64 │ [0.50765842 0.88904295]     │
├─────────────────────────┼──────────────────┼──────────────────┼───────────┼─────────────┼───────────┼─────────┼─────────────────────────────┤
│ GPR.likelihood.variance │ Parameter        │ Softplus + Shift │           │ False       │ ()        │ float64 │ 1.0000000116860993e-07      │
├─────────────────────────┼──────────────────┼──────────────────┼───────────┼─────────────┼───────────┼─────────┼─────────────────────────────┤
│ GPR.data[0]             │ ResourceVariable │                  │           │ False       │ (None, 2) │ float64 │ [[0.75563049, 0.81419373... │
├─────────────────────────┼──────────────────┼──────────────────┼───────────┼─────────────┼───────────┼─────────┼─────────────────────────────┤
│ GPR.data[1]             │ ResourceVariable │                  │           │ False       │ (None, 1) │ float64 │ [[1.69841...                │
╘═════════════════════════╧══════════════════╧══════════════════╧═══════════╧═════════════╧═══════════╧═════════╧═════════════════════════════╛
2025-01-09 14:54:18.332652: I tensorflow/core/kernels/logging_ops.cc:171] Optimization completed without errors

Traceback (most recent call last):
  File "/Users/timothynunn/trieste/docs/notebooks/expected_improvement.pct.py", line 289, in <module>
    result.save("results_path")
  File "/Users/timothynunn/trieste/trieste/bayesian_optimizer.py", line 329, in save
    record.save(record_path)
  File "/Users/timothynunn/trieste/trieste/bayesian_optimizer.py", line 138, in save
    dill.dump(self, f, dill.HIGHEST_PROTOCOL)
  File "/Users/timothynunn/trieste/.venv/lib/python3.10/site-packages/dill/_dill.py", line 336, in dump
    Pickler(file, protocol, **_kwds).dump(obj)
  File "/Users/timothynunn/trieste/.venv/lib/python3.10/site-packages/dill/_dill.py", line 620, in dump
    StockPickler.dump(self, obj)
  File "/opt/homebrew/Cellar/[email protected]/3.10.13_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/pickle.py", line 487, in dump
    self.save(obj)
  File "/opt/homebrew/Cellar/[email protected]/3.10.13_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/pickle.py", line 603, in save
    self.save_reduce(obj=obj, *rv)
  File "/opt/homebrew/Cellar/[email protected]/3.10.13_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/pickle.py", line 717, in save_reduce
    save(state)
  File "/opt/homebrew/Cellar/[email protected]/3.10.13_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/pickle.py", line 560, in save
    f(self, obj)  # Call unbound method with explicit self
  File "/Users/timothynunn/trieste/.venv/lib/python3.10/site-packages/dill/_dill.py", line 1251, in save_module_dict
    StockPickler.save_dict(pickler, obj)
  File "/opt/homebrew/Cellar/[email protected]/3.10.13_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/pickle.py", line 972, in save_dict
    self._batch_setitems(obj.items())
  File "/opt/homebrew/Cellar/[email protected]/3.10.13_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/pickle.py", line 998, in _batch_setitems
    save(v)
  File "/opt/homebrew/Cellar/[email protected]/3.10.13_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/pickle.py", line 560, in save
    f(self, obj)  # Call unbound method with explicit self
  File "/Users/timothynunn/trieste/.venv/lib/python3.10/site-packages/dill/_dill.py", line 1251, in save_module_dict
    StockPickler.save_dict(pickler, obj)
  File "/opt/homebrew/Cellar/[email protected]/3.10.13_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/pickle.py", line 972, in save_dict
    self._batch_setitems(obj.items())
  File "/opt/homebrew/Cellar/[email protected]/3.10.13_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/pickle.py", line 1003, in _batch_setitems
    save(v)
  File "/opt/homebrew/Cellar/[email protected]/3.10.13_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/pickle.py", line 603, in save
    self.save_reduce(obj=obj, *rv)
  File "/opt/homebrew/Cellar/[email protected]/3.10.13_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/pickle.py", line 717, in save_reduce
    save(state)
  File "/opt/homebrew/Cellar/[email protected]/3.10.13_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/pickle.py", line 560, in save
    f(self, obj)  # Call unbound method with explicit self
  File "/Users/timothynunn/trieste/.venv/lib/python3.10/site-packages/dill/_dill.py", line 1251, in save_module_dict
    StockPickler.save_dict(pickler, obj)
  File "/opt/homebrew/Cellar/[email protected]/3.10.13_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/pickle.py", line 972, in save_dict
    self._batch_setitems(obj.items())
  File "/opt/homebrew/Cellar/[email protected]/3.10.13_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/pickle.py", line 998, in _batch_setitems
    save(v)
  File "/opt/homebrew/Cellar/[email protected]/3.10.13_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/pickle.py", line 603, in save
    self.save_reduce(obj=obj, *rv)
  File "/opt/homebrew/Cellar/[email protected]/3.10.13_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/pickle.py", line 713, in save_reduce
    self._batch_setitems(dictitems)
  File "/opt/homebrew/Cellar/[email protected]/3.10.13_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/pickle.py", line 998, in _batch_setitems
    save(v)
  File "/opt/homebrew/Cellar/[email protected]/3.10.13_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/pickle.py", line 603, in save
    self.save_reduce(obj=obj, *rv)
  File "/opt/homebrew/Cellar/[email protected]/3.10.13_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/pickle.py", line 717, in save_reduce
    save(state)
  File "/opt/homebrew/Cellar/[email protected]/3.10.13_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/pickle.py", line 560, in save
    f(self, obj)  # Call unbound method with explicit self
  File "/Users/timothynunn/trieste/.venv/lib/python3.10/site-packages/dill/_dill.py", line 1251, in save_module_dict
    StockPickler.save_dict(pickler, obj)
  File "/opt/homebrew/Cellar/[email protected]/3.10.13_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/pickle.py", line 972, in save_dict
    self._batch_setitems(obj.items())
  File "/opt/homebrew/Cellar/[email protected]/3.10.13_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/pickle.py", line 998, in _batch_setitems
    save(v)
  File "/opt/homebrew/Cellar/[email protected]/3.10.13_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/pickle.py", line 603, in save
    self.save_reduce(obj=obj, *rv)
  File "/opt/homebrew/Cellar/[email protected]/3.10.13_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/pickle.py", line 692, in save_reduce
    save(args)
  File "/opt/homebrew/Cellar/[email protected]/3.10.13_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/pickle.py", line 560, in save
    f(self, obj)  # Call unbound method with explicit self
  File "/opt/homebrew/Cellar/[email protected]/3.10.13_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/pickle.py", line 902, in save_tuple
    save(element)
  File "/opt/homebrew/Cellar/[email protected]/3.10.13_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/pickle.py", line 560, in save
    f(self, obj)  # Call unbound method with explicit self
  File "/opt/homebrew/Cellar/[email protected]/3.10.13_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/pickle.py", line 842, in save_picklebuffer
    self.save_bytearray(m.tobytes())
  File "/opt/homebrew/Cellar/[email protected]/3.10.13_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/pickle.py", line 821, in save_bytearray
    self.memoize(obj)
  File "/opt/homebrew/Cellar/[email protected]/3.10.13_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/pickle.py", line 508, in memoize
    assert id(obj) not in self.memo
AssertionError

My environment:

absl-py==2.1.0
accessible-pygments==0.0.5
aiohttp==3.9.5
aiohttp-cors==0.7.0
aiosignal==1.3.1
alabaster==0.7.16
annotated-types==0.7.0
anyio==4.4.0
appnope==0.1.4
argon2-cffi==23.1.0
argon2-cffi-bindings==21.2.0
arrow==1.3.0
astroid==3.2.2
asttokens==2.4.1
astunparse==1.6.3
async-lru==2.0.4
async-timeout==4.0.3
attrs==23.2.0
Babel==2.15.0
beautifulsoup4==4.12.3
bleach==6.1.0
cachetools==5.3.3
certifi==2024.6.2
cffi==1.16.0
charset-normalizer==3.3.2
check-shapes==1.1.1
click==8.1.7
cloudpickle==3.1.0
colorful==0.5.6
comm==0.2.2
contourpy==1.2.1
cycler==0.12.1
debugpy==1.8.1
decorator==5.1.1
defusedxml==0.7.1
Deprecated==1.2.15
dill==0.3.5.1
distlib==0.3.8
dm-tree==0.1.8
docutils==0.21.2
dropstackframe==0.1.1
exceptiongroup==1.2.1
executing==2.0.1
fastjsonschema==2.20.0
filelock==3.15.4
flatbuffers==24.3.25
fonttools==4.53.0
fqdn==1.5.1
frozenlist==1.4.1
gast==0.6.0
google-api-core==2.19.0
google-auth==2.30.0
google-pasta==0.2.0
googleapis-common-protos==1.63.1
gpflow==2.9.2
gpflux==0.4.4
greenlet==3.1.1
grpcio==1.64.1
h11==0.14.0
h5py==3.12.1
httpcore==1.0.5
httpx==0.27.0
idna==3.7
imageio==2.34.1
imagesize==1.4.1
ipykernel==6.29.4
ipython==8.25.0
isoduration==20.11.0
jedi==0.19.1
Jinja2==3.1.4
json5==0.9.25
jsonpointer==3.0.0
jsonschema==4.22.0
jsonschema-specifications==2023.12.1
jupyter-events==0.10.0
jupyter-lsp==2.2.5
jupyter_client==8.6.2
jupyter_core==5.7.2
jupyter_server==2.14.1
jupyter_server_terminals==0.5.3
jupyterlab==4.2.2
jupyterlab_pygments==0.3.0
jupyterlab_server==2.27.2
jupytext==1.16.2
keras==3.7.0
kiwisolver==1.4.5
lark==1.2.2
latexcodec==3.0.0
libclang==18.1.1
linkify-it-py==2.0.3
Markdown==3.7
markdown-it-py==3.0.0
MarkupSafe==2.1.5
matplotlib==3.9.0
matplotlib-inline==0.1.7
mdit-py-plugins==0.4.1
mdurl==0.1.2
memray==1.13.0
mistune==3.0.2
ml-dtypes==0.3.2
msgpack==1.0.8
multidict==6.0.5
multipledispatch==1.0.0
namex==0.0.8
nbclient==0.10.0
nbconvert==7.16.4
nbformat==5.10.4
nbsphinx==0.9.4
nest-asyncio==1.6.0
notebook_shim==0.2.4
numpy==1.26.4
opencensus==0.11.4
opencensus-context==0.1.3
opt_einsum==3.4.0
optree==0.13.1
overrides==7.7.0
packaging==24.1
pandocfilters==1.5.1
parso==0.8.4
pexpect==4.9.0
pillow==10.3.0
platformdirs==4.2.2
plotly==5.22.0
prometheus_client==0.20.0
prompt_toolkit==3.0.47
proto-plus==1.24.0
protobuf==4.25.3
psutil==6.0.0
ptyprocess==0.7.0
pure-eval==0.2.2
py-spy==0.3.14
pyasn1==0.6.0
pyasn1_modules==0.4.0
pybtex==0.24.0
pybtex-docutils==1.0.3
pycparser==2.22
pydantic==2.7.4
pydantic_core==2.18.4
pydata-sphinx-theme==0.15.3
Pygments==2.18.0
pyparsing==3.1.2
python-dateutil==2.9.0.post0
python-json-logger==2.0.7
PyYAML==6.0.1
pyzmq==26.0.3
ray==2.30.0
referencing==0.35.1
requests==2.32.3
rfc3339-validator==0.1.4
rfc3986-validator==0.1.1
rich==13.7.1
rpds-py==0.18.1
rsa==4.9
scipy==1.14.1
Send2Trash==1.8.3
six==1.16.0
smart-open==7.0.4
sniffio==1.3.1
snowballstemmer==2.2.0
soupsieve==2.5
Sphinx==7.3.7
sphinx-autoapi==3.1.2
sphinxcontrib-applehelp==1.0.8
sphinxcontrib-bibtex==2.6.2
sphinxcontrib-devhelp==1.0.6
sphinxcontrib-htmlhelp==2.0.5
sphinxcontrib-jsmath==1.0.1
sphinxcontrib-qthelp==1.0.7
sphinxcontrib-serializinghtml==1.1.10
stack-data==0.6.3
tabulate==0.9.0
tenacity==8.4.1
tensorboard==2.16.2
tensorboard-data-server==0.7.2
tensorflow==2.16.2
tensorflow-io-gcs-filesystem==0.37.1
tensorflow-macos==2.16.2
tensorflow-probability==0.24.0
termcolor==2.5.0
terminado==0.18.1
textual==0.70.0
tf_keras==2.16.0
tinycss2==1.3.0
tomli==2.0.1
tornado==6.4.1
traitlets==5.14.3
-e git+ssh://[email protected]/secondmind-labs/trieste.git@25d2a038fc1a74485337afac4fa45f29a4c4a311#egg=trieste
types-python-dateutil==2.9.0.20240316
typing_extensions==4.12.2
uc-micro-py==1.0.3
uri-template==1.3.0
urllib3==2.2.2
virtualenv==20.26.3
wcwidth==0.2.13
webcolors==24.6.0
webencodings==0.5.1
websocket-client==1.8.0
Werkzeug==3.1.3
wrapt==1.16.0
yarl==1.9.4

@uri-granta
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Thanks! The environment looks correct to me. I'll see if I can find someone local running macOS to try and figure out what's going wrong.

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@uri-granta @timothy-nunn