diff --git a/docs/release_notes/index.md b/docs/release_notes/index.md index be19998bdf..791be74d25 100644 --- a/docs/release_notes/index.md +++ b/docs/release_notes/index.md @@ -8,6 +8,7 @@ is available in the [commit logs](https://github.com/YosefLab/scvi-tools/commits ```{toctree} :maxdepth: 2 +v0.17.4 v0.17.3 v0.17.2 v0.17.1 diff --git a/docs/release_notes/v0.17.4.md b/docs/release_notes/v0.17.4.md new file mode 100644 index 0000000000..3a3248fd72 --- /dev/null +++ b/docs/release_notes/v0.17.4.md @@ -0,0 +1,43 @@ +# New in 0.17.4 (2021-09-20) + +## Changes +- Support for PyTorch Lightning 1.7 [#1622]. +- Allow `flax` to use any mutable states used by a model generically with {class}`~scvi.module.base.TrainStateWithState` [#1665], [#1700]. +- Update publication links in `README` [#1667]. +- Docs now include floating window cross references with `hoverxref`, external links with `linkcode`, and `grid` [#1678]. + +## Bug Fixes +- Fix `get_likelihood_parameters()` failure when `gene_likelihood != "zinb"` in {class}`~scvi.model.base.RNASeqMixin` [#1618]. +- Fix exception logic when not using the observed library size in {class}`~scvi.module.VAE` initialization [#1660]. +- Replace instances of `super().__init__()` with an argument in `super()`, causing `autoreload` extension to throw errors [#1671]. +- Change cell2location tutorial causing docs build to fail [#1674]. +- Replace instances of `max_epochs` as `int`s for new PyTorch Lightning [#1686]. +- Catch case when `torch.backends.mps` is not implemented [#1692]. +- Fix Poisson sampling in {meth}`~scvi.module.VAE.sample` [#1702]. + +## Contributors + +- [@adamgayoso] +- [@watiss] +- [@mkarikom] +- [@tommycelsius] +- [@ricomnl] + +[#1618]: https://github.com/scverse/scvi-tools/pull/1618 +[#1622]: https://github.com/scverse/scvi-tools/pull/1622 +[#1660]: https://github.com/scverse/scvi-tools/pull/1660 +[#1665]: https://github.com/scverse/scvi-tools/pull/1665 +[#1667]: https://github.com/scverse/scvi-tools/pull/1667 +[#1671]: https://github.com/scverse/scvi-tools/pull/1671 +[#1674]: https://github.com/scverse/scvi-tools/pull/1674 +[#1678]: https://github.com/scverse/scvi-tools/pull/1678 +[#1686]: https://github.com/scverse/scvi-tools/pull/1686 +[#1692]: https://github.com/scverse/scvi-tools/pull/1692 +[#1700]: https://github.com/scverse/scvi-tools/pull/1700 +[#1702]: https://github.com/scverse/scvi-tools/pull/1702 + +[@adamgayoso]: https://github.com/adamgayoso +[@watiss]: https://github.com/watiss +[@tommycelsius]: https://github.com/tommycelsius +[@mkarikom]: https://github.com/mkarikom +[@ricomnl]: https://github.com/ricomnl \ No newline at end of file diff --git a/pyproject.toml b/pyproject.toml index baa0531fa6..cc4608b2cb 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -27,7 +27,7 @@ packages = [ {include = "scvi"}, ] readme = "README.md" -version = "0.17.3" +version = "0.17.4" [tool.poetry.dependencies] anndata = ">=0.7.5"