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module 'scirpy.pp' has no attribute 'index_chains' #416

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xuezhang335 opened this issue Jun 5, 2023 · 2 comments
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module 'scirpy.pp' has no attribute 'index_chains' #416

xuezhang335 opened this issue Jun 5, 2023 · 2 comments

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@xuezhang335
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Hi @grst,
When I used the ir.pp.index_chians, met the error: module 'scirpy.pp' has no attribute 'index_chains'.
It seems that there is no function: ir.pp.index_chians. The version of scirpy is 0.12.2. Am I missing something?

>>> dir(ir.pp) ['__builtins__', '__cached__', '__doc__', '__file__', '__loader__', '__name__', '__package__', '__path__', '__spec__', '_merge_adata', 'deprecated', 'ir_dist', 'ir_neighbors', 'merge_airr_chains', 'merge_with_ir', 'merge_with_tcr', 'tcr_neighbors']

Thanks very much,
Zhang

@grst
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grst commented Jun 5, 2023

Sorry for the confusion. The documentation on https://scirpy.scverse.org/en/latest/ already points to the docs for v0.13 in which significant changes were introduced.

The latest stable release is still v0.12.2.

I will release v0.13 within the next days.

You can upgrade to the pre-release of v0.13 already using

pip install --pre --upgrade scirpy

alternatively, you'll find the documentation for v0.12 here: https://scverse.org/scirpy/tags/v0.12.0/index.html

(I'd recommend you go for the v0.13 already - support for v0.12 will end soon -- I'm happy to help with any issues you have with the new version).

@grst grst pinned this issue Jun 5, 2023
@grst
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grst commented Jun 9, 2023

v0.13 is now released and available from PyPI.

I'm closing this issue for now, let me know if there are other problems!

@grst grst closed this as completed Jun 9, 2023
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